PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31935.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bZIP
Protein Properties Length: 292aa    MW: 31953.8 Da    PI: 8.8615
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31935.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.61.7e-15136187455
                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                 +kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L aeN++L   l + +++
  KFK31935.1 136 VKRVRRMLSNRESARRSRRRKQAHLSELETQVSQLRAENSKLMRGLTNVTQT 187
                 79****************************************9888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.7E-18133197IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.208135186IPR004827Basic-leucine zipper domain
PfamPF001704.3E-13136186IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.9E-12136187No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-11136187No hitNo description
PROSITE patternPS000360140155IPR004827Basic-leucine zipper domain
PfamPF124985.2E-13204251IPR020983Basic leucine-zipper, C-terminal
PfamPF124982.9E-5263287IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEKVLSDEEI SGWSALDNGT ASMNRSASEW AFHRFIQETT DGEAATACGE PVDSDVYREF  60
LKNKLDLACA AVAMKRGSFI NTSENGGAYT STASEQSSLA SSKAAPMMSS AITSGSELSG  120
DDEEADGVTN MNPTNVKRVR RMLSNRESAR RSRRRKQAHL SELETQVSQL RAENSKLMRG  180
LTNVTQTFND AAVENRVLKA NVETLRAKVK MAEERVKRIT GFIPMFHTMP QVSTASLPSE  240
TSNSPDTSVH VTTPEISSSK ALIGCKINRT ASMRRVASLE HLQKRIRSVG DQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149156RRSRRRKQ
2151156SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269|PubMed:26263501, ECO:0000269|PubMed:29348240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31935.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532650.0AK353265.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-D15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395031.11e-159basic leucine zipper 63
SwissprotB9DGI81e-152BZP63_ARATH; Basic leucine zipper 63
TrEMBLA0A087GPY30.0A0A087GPY3_ARAAL; Uncharacterized protein
STRINGA0A087GPY30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68462743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-140bZIP family protein
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Mair A, et al.
    SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants.
    Elife, 2016.
    [PMID:26263501]
  5. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]