PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK31815.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 217aa MW: 25181.4 Da PI: 7.318 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 66.5 | 5e-21 | 53 | 103 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 rY +C+kN+ as+G++a+DGCgEf++s +++ CaACgC R+FHR e+ee+ KFK31815.1 53 PRYGKCKKNQSASMGTTAYDGCGEFVAS------ISGEDCAACGCNRSFHREEEEEQ 103 69*************************9......6788**************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 5.0E-17 | 54 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.3E-15 | 54 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-10 | 55 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 16.066 | 55 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-18 | 152 | 216 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.51E-10 | 156 | 216 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.6E-26 | 159 | 214 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MEEINSKKEE NPKPKRRSKP ICRITSDHVH YPPTRRTKPT RPSHAPSPNL KAPRYGKCKK 60 NQSASMGTTA YDGCGEFVAS ISGEDCAACG CNRSFHREEE EEQSEESILE KCIRSGTIDE 120 SVLEMLEITS DQFRQIFCSP YGDKGEEDLV VEKEEERVKR LKTKFTVEQT EKMRCYAEKI 180 LWKVRPENRE EVDGFCVEIG VDRKRFMIWI NNHRDKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK31815.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002865484.1 | 1e-79 | zinc-finger homeodomain protein 13 | ||||
Swissprot | Q9FMY7 | 4e-75 | ZHD13_ARATH; Zinc-finger homeodomain protein 13 | ||||
TrEMBL | A0A087GPL3 | 1e-159 | A0A087GPL3_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GPL3 | 1e-160 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15888 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42780.1 | 2e-63 | homeobox protein 27 |