PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK31733.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | C2H2 | ||||||||
Protein Properties | Length: 188aa MW: 20493.2 Da PI: 8.8893 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F + L H +H KFK31733.1 68 YKCSVCDKAFQSYQALGGHKASH 90 9*********9998888887777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-4 | 64 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.72E-9 | 67 | 137 | No hit | No description |
Pfam | PF13912 | 4.3E-14 | 68 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.014 | 68 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.014 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.8E-12 | 115 | 139 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.787 | 115 | 137 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.2 | 115 | 137 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 117 | 137 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MALEALNSPR LLPSQTLFED SSAGFHGKGK RSKRSRSDHN NGLTEEEYLA FCLMLLARDG 60 DRAEKPIYKC SVCDKAFQSY QALGGHKASH RKIFNQTQSS GGGDDVKPTT VVKSHVCSIC 120 LKSFGTGQAL GGHKRCHYEG CFSNSEDVGS TSHVSGHRGF DLNISLIQEL SPVNVAMPAK 180 KPRFVFSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates root development and phosphate (Pi) acquisition and homeostasis. Probably acts as a repressor of primary root growth and regulates Pi homeostasis through the control of root architecture. {ECO:0000269|PubMed:17631527}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK31733.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment and during Pi starvation. {ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:17631527}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013651714.1 | 2e-75 | zinc finger protein AZF3 | ||||
Swissprot | O22533 | 6e-74 | ZAT6_ARATH; Zinc finger protein ZAT6 | ||||
TrEMBL | A0A087GPD1 | 1e-137 | A0A087GPD1_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GPD1 | 1e-138 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1211 | 28 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04340.1 | 2e-76 | zinc finger of Arabidopsis thaliana 6 |