PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31654.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 372aa    MW: 41115 Da    PI: 8.1556
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31654.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-06100123326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  e C+ f+ +G C+ G+ C FaHg
  KFK31654.1 100 GEVCPEFRHGGDCSLGNECGFAHG 123
                 589********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.06E-596124IPR000571Zinc finger, CCCH-type
SMARTSM003560.03797124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.70997125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4101125IPR000571Zinc finger, CCCH-type
SMARTSM003562.4133156IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000932Cellular Componentcytoplasmic mRNA processing body
GO:0010494Cellular Componentcytoplasmic stress granule
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDIELNKSGH IMRPTVDIPP RKLLSTVKSP SSYSSPRRDD KDHCYDSDSD DPYAGDHFRM  60
YEFKIRRCTR SRSHDWTDCP FSHPGEKARR RDPRLFQYTG EVCPEFRHGG DCSLGNECGF  120
AHGVFECWLH PNRYRTEACK DGKHCNRKVC FFAHSPRQLR VLPPENVISG GVSSPAVTAL  180
SGKNNNQCCL FCNSHSPTST LLGLSHFSRS PSSSPPLSPA NKAAAFSRLS RHRLAVGYKE  240
ALNELISSLD SISLTEALAV ASSASTVTMP VSTAVMLSNH HHHRIPPWLD VGDRDLQLHS  300
SLQFGHSPST PSYLHSQLQL QQPPPPSFFS DAFTPRGGRI SDFTAAASAF AAAKEVGSSG  360
DPDLRWVNDL LT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31654.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871649.11e-167zinc finger CCCH domain-containing protein 61 isoform X1
SwissprotQ9FKW21e-159C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLA0A087GP520.0A0A087GP52_ARAAL; Uncharacterized protein
STRINGA0A087GP520.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.11e-125C3H family protein