PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31355.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Trihelix
Protein Properties Length: 399aa    MW: 45265.9 Da    PI: 6.9461
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31355.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.91.1e-22293379185
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege....kkrtsessstcpyfdql 85 
                 rW+++ev aLi+ r+e+ee+ +    k   W+e+s km+e+g+ers k+Ckekwen+nk+yk+i+e+     +k++++ss+t +yf++l
  KFK31355.1 293 RWPQEEVEALITSRSEVEEKPGIH--KFLIWDEISVKMKEKGYERSGKKCKEKWENMNKYYKRITERGtkqpWKKQPNSSKTRAYFEKL 379
                 8********************998..7899**********************************98751111556799999999**998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.306286348IPR017877Myb-like domain
SuperFamilySSF466897.77E-5291350IPR009057Homeodomain-like
CDDcd122034.72E-20292355No hitNo description
Gene3DG3DSA:1.10.10.606.8E-4292348IPR009057Homeodomain-like
PfamPF138372.8E-17292379No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MELLAGKRIG DDFAGDVNPF NSSDGGCEWM YSSRQSGNDD ALATLADLAP PPQKLKPIRC  60
VVKAPPSSDH RHPLDILAGT LEMGFGCFEA PLGTKIADVE ESGQLACGFS KEDSLGDEME  120
FPGRNRTSWD GVSLSSSVDS DSDSSLGASK DGFAARKSIT GKRKRETRDK MEHFLEKLVG  180
GMMKRQEKMH NKLIKVMEKM EHERVRREEA WRQQEVERMR QNEEARKQEM SRSLSLISFI  240
KTVIGDEIEI EIPKPLSDLP QQPQNLPEQC ENRIFESAGT QRDGKSAHSS GRRWPQEEVE  300
ALITSRSEVE EKPGIHKFLI WDEISVKMKE KGYERSGKKC KEKWENMNKY YKRITERGTK  360
QPWKKQPNSS KTRAYFEKLG DLYKTNSGSA DHSAVKDEE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31355.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865109.10.0trihelix transcription factor GTL1
RefseqXP_006398465.10.0trihelix transcription factor GTL1
RefseqXP_024010989.10.0trihelix transcription factor GTL1
TrEMBLA0A087GNA30.0A0A087GNA3_ARAAL; Uncharacterized protein
STRINGA0A087GNA30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-161Trihelix family protein