PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK31230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | bHLH | ||||||||
Protein Properties | Length: 707aa MW: 77965.8 Da PI: 5.9054 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12 | 0.00038 | 544 | 592 | 13 | 40 |
HHHHHHHHHHHHCTSCCC........................TTS-STC CS HLH 13 RdriNsafeeLrellPkas.....................kapskKlsK 40 R+ i +++ eLrel+P+ s ++ KlsK KFK31230.1 544 RQLIQDRIKELRELVPNGSkcsidsllertikhmlflqnvTKHADKLSK 592 67799************53355555555555555555555555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.5E-19 | 50 | 140 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 4.80E-4 | 525 | 582 | No hit | No description |
PROSITE profile | PS50888 | 11.28 | 531 | 580 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-4 | 544 | 593 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-5 | 544 | 586 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 707 aa Download sequence Send to blast |
MELYIECSFK VLTLEDAYYD NHGQSNSPGV EGCSVIPKNT HGGHDPLGLA VAKMSYHVYS 60 LGEGIVGQVA VSGEHQWVFP EYYDHCHSPF EFHNVWESQI SAGIKTILVV AVGPCGVVQL 120 GSLCKVDEDV TLVNHIRHLF LALKDPLADH AANLMQCNMN DSLCLPKIPS ECLRVEAFPD 180 CSGEVDKAMN AAESNIVNQY KTRRSDSMHY NTPSSCLLTE KAAQIIGGHD VQVSTCGSYS 240 GVTFGFPTDL VDAKHENQVG TNIISDAPHV GMTSGCKDHP RGLDPNLHMY LKHHVFNNAS 300 SSEVERLMTG QSYPGLDSTF HASSRPDKEI SYGNEVFQLS ENQENKYLKE TERIQERKCE 360 SSRFDTLISS GYAFAGSELL EALGSGFMQT SSGHEELVKS EHGSAMRPTD DMSHSQLTFD 420 SARENLLDAM VANVCHSDGN AGDDMFSSRS VQSFLTSMEM AEPSGQRKHI AVNPIDSAMN 480 QLPLTEVDTQ QNPSDICGAF SSIGFSSTCP SSSSDQFQTS LEMPKKNKKR AKPGESSRPR 540 PRDRQLIQDR IKELRELVPN GSKCSIDSLL ERTIKHMLFL QNVTKHADKL SKSATTKMQQ 600 KETGTQGSSC AVEVGGHLQV SSIIVENLNK QGMVLIEMLC EECSHFLEIA NVIKSLDLVI 660 LRGVTETHGD KTWICFVVES QNNKVMQRMD ILWSLVQIFQ PKANGKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may regulate root development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK31230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY954808 | 0.0 | AY954808.1 Arabidopsis thaliana hypothetical protein (At2g31280) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010510215.1 | 0.0 | PREDICTED: transcription factor bHLH155 isoform X1 | ||||
Swissprot | Q58G01 | 0.0 | LHWL3_ARATH; Transcription factor bHLH155 | ||||
TrEMBL | A0A087GMX8 | 0.0 | A0A087GMX8_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GMX8 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2083 | 20 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 0.0 | conserved peptide upstream open reading frame 7 |
Publications ? help Back to Top | |||
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