PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30878.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 459aa    MW: 52117.3 Da    PI: 4.6076
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30878.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.99.3e-1915105195
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 ffkv+   ++++s+ + +p ++ +e  +    +kt +l+ + g +W+v + ++kk++++ ++kGW +Fvk+n L +gDf++F ++g+s fe  + 
  KFK30878.1  15 FFKVF--ISHMSSDSMLIPISYYDELPYH--LPKTAILRGTGGCVWNVAIDIKKKQEEVHFGKGWAKFVKDNSLSDGDFLTFVYNGKSVFEVSIY 105
                 89999..77888888********998766..889****************99999999***************************9999955554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-2110110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2211110IPR015300DNA-binding pseudobarrel domain
CDDcd100174.34E-1813105No hitNo description
PROSITE profilePS5086313.49313108IPR003340B3 DNA binding domain
SMARTSM010199.2E-1615108IPR003340B3 DNA binding domain
PfamPF023622.6E-1615104IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-6362455IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-6365456IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.083365457IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MATSDEDGEE NPPRFFKVFI SHMSSDSMLI PISYYDELPY HLPKTAILRG TGGCVWNVAI  60
DIKKKQEEVH FGKGWAKFVK DNSLSDGDFL TFVYNGKSVF EVSIYGRDGC KEIRAVTEVE  120
EDEEEVSICS LSSKDMDTCS ESEMANAIPR SKNKGTSSEE NMEVSDDDDD DIEDSVYSLN  180
SEEDTDTEES DSEFNMASTI PRSKNKGKPK AKVVDDSDDF VDNVYAEDTD TDTDSEFKIA  240
NAIPRIKNKG KEKEEEVSES SDEKDSDSDY IEAFSNLDFE DNSDSDDSSY SLADSEETLS  300
CPLKTTKVKP KVTKPEKKGK SKVKEDVDAM SESSCPVAIG KKMKKAIPKI KNPESYLDDP  360
KNVFFESSIK NRLYELLVHA QLVKDYGLKF KDKVCYIDPK GELEAKTAKW KDERVCIKKW  420
KRICERNKLK KKDRILCELL RRGKLVYAIK LHIFREKDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-141411010104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30878.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396490.11e-167B3 domain-containing protein At4g34400
SwissprotQ9SZ051e-116Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLA0A087GLX60.0A0A087GLX6_ARAAL; Uncharacterized protein
STRINGA0A087GLX60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.13e-52B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]