PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30743.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 621aa    MW: 70798 Da    PI: 4.7961
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30743.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.41.9e-25121423128
         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkya....tgkrknratksgyWkatgkdkevlsk 95 
                 pG rF+Pt+ el+ +yL+++++++k +    i+++++y+ ePw L++  + k +++ w++F++r++ ++    ++kr++r++ s +Wk+tg  +++ ++
  KFK30743.1  12 PGSRFNPTELELI-NYLRRRIDRNKKSR--YITDLNVYEKEPWLLQHviHPKFKKNVWFYFVTRKRPAKiknpNSKRTSRVVGSCRWKTTGLLTDLRDE 107
                 9************.9*******999555..8**************953444447789*999999885544444899*********************** PP

         NAM  96 kgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                 +g +vg+ +++vf    +g++ +  +t Wvmhe+ l
  KFK30743.1 108 DGVKVGTMQSIVFKakiEGKKDE-INTGWVMHEFLL 142
                 *************9654555555.79********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-2710158IPR003441NAC domain
PROSITE profilePS5100529.60710158IPR003441NAC domain
PfamPF023651.1E-1312140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MAILRIPRSQ IPGSRFNPTE LELINYLRRR IDRNKKSRYI TDLNVYEKEP WLLQHVIHPK  60
FKKNVWFYFV TRKRPAKIKN PNSKRTSRVV GSCRWKTTGL LTDLRDEDGV KVGTMQSIVF  120
KAKIEGKKDE INTGWVMHEF LLDKTGFQEV VLCRIEFKHE NKNALYAPRL EPIVIGEADL  180
VENKEKKEED FLSLTDLESL GISMDLPKHP MSFQEPWFGP CSSETVPNLT AMGQESSYLV  240
NGGIEQHQDF GYCSYQQQNQ TLGHFSSMEP QQSYGQGFGG VAHAYQNQYL GQGTNPWQVS  300
MMNQDMAIMT RGMMVHQQEQ CLAAQYQQLS MNRGMEQHQD FGSCGQFVGE SLGQQQNQFL  360
GQQVTNLSPL GQQQWNVYSG PYLAQPYDQG IVPVTHQDLN SSYLCLAQDL GQNNDLSVVP  420
METQQAGMEP QQHDSSCFNH NVVEDLATQR QHLGQESNLS LTQQQNQILG HLSPMEQQQN  480
MNQALEEQHY GQVVPESAQL DLGQTIDLPK ETQQQDNVVE NLPTQLHLET NQETVLPINQ  540
GINEPHGDHC SSSTLNESNQ QSFDDETALT DQELDSMMDN LRNEEWAKKL GVNTPEEEAE  600
LTASLRNCNT YQSLLNYFCP I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-14716114171NAC domain-containing protein 19
3swm_B4e-14716114171NAC domain-containing protein 19
3swm_C4e-14716114171NAC domain-containing protein 19
3swm_D4e-14716114171NAC domain-containing protein 19
3swp_A4e-14716114171NAC domain-containing protein 19
3swp_B4e-14716114171NAC domain-containing protein 19
3swp_C4e-14716114171NAC domain-containing protein 19
3swp_D4e-14716114171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30743.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087GLJ10.0A0A087GLJ1_ARAAL; Uncharacterized protein
STRINGA0A087GLJ10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144241018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-17NAC family protein