|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
KFK30628.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
|
Family |
bHLH |
Protein Properties |
Length: 560aa MW: 63733.7 Da PI: 6.1795 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
KFK30628.1 | genome | MPIPBR | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 18.6 | 3.4e-06 | 364 | 401 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
R+r N++f+ Lr+++P+ + ++K +iL +++Y+++L+
KFK30628.1 364 RRRENEKFSVLRTMVPTvN------EVDKESILNNTIKYLQELE 401
6777*************65......8***************995 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 560 aa
Download sequence Send
to blast |
MSLTMDDSVE VGRGGRSKAQ NSLLRKQLAL AVRSVQWSYA IFWSSSPTQS GVLEWGEGSY 60 NGDIKKRKKI YEAHCKYGLQ RSKQLRKLYL CMLEGDTSST THHDDYDDGD DDGGRNSTTM 120 MLSPDDLSDE EWYYLVSMSY VFSPSQCLPG RALATGETIW LCNAQYAETK LFSRSLLARS 180 ASIQTVVCFP LLGGVIELGV TELISEDPNV LQHIKSCLLE TSKPDCSLNH FSVHQDNDEE 240 KNQMRIKTSE GNSMLEENHE ILLGLSDEDL HYKRTITTVL KHAANRSRRN DKNIHHRRPN 300 VDSGSSFFRW KRHEQPKSNV LQPPSQNVLR KILHDVPLMH STDTKRMFPS QRFGLNQDDP 360 NSDRRRENEK FSVLRTMVPT VNEVDKESIL NNTIKYLQEL EARVEELESC MGSVNFTERQ 420 KMTTKNLNDS VLIEETSGNY DDSTKIDGNS GETEQVFRDQ THLSVKLEET EVVIEVRCSY 480 RDYIVADIME TLSNLHMDAF SVRSHTLNGF LTLNLKAKFR GAAVASVGMI KRELRRVIDF 540 LESIWDVSLP SASSFPSVLM
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4rqw_A | 1e-12 | 24 | 218 | 9 | 192 | Transcription factor MYC3 |
4rqw_B | 1e-12 | 24 | 218 | 9 | 192 | Transcription factor MYC3 |
4rs9_A | 1e-12 | 24 | 218 | 9 | 192 | Transcription factor MYC3 |
4yz6_A | 1e-12 | 24 | 218 | 9 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Trancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AB493664 | 0.0 | AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480. |
GenBank | AF251697 | 0.0 | AF251697.1 Arabidopsis thaliana putative transcription factor BHLH12 mRNA, complete cds. |