PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

KFK30603.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

LBD

Protein Properties

Length: 211aa MW: 22804.4 Da PI: 5.007

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK30603.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.9	3.4e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++C++apyf +e+ +++f +vhk+FGasn kll+++p ++r da+ +l yeA ar++dPvyG+vg+i++lq+q+++l+aela+ + KFK30603.1 7 PCGACKFLRRKCVAECIFAPYFDSEEgAAHFTAVHKVFGASNAAKLLSTVPASQRLDAVVTLSYEAFARLSDPVYGCVGHIFALQHQVMNLQAELAYFQ 105 7*******************998879******************************************************************988 PP DUF260 99 ee 100 ++ KFK30603.1 106 TH 107 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.707	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.2E-38	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MSAGGSPCGA CKFLRRKCVA ECIFAPYFDS EEGAAHFTAV HKVFGASNAA KLLSTVPASQ 60 RLDAVVTLSY EAFARLSDPV YGCVGHIFAL QHQVMNLQAE LAYFQTHLSA LQRIPPPNPQ 120 KNSPPEAASS SNVSLIAYFD DNNNNNNNNR SNVSMSQQQE DIKVSAESLD FSSLLGLEDP 180 ADEDGDLNAL AREFLSKYLN GGKCRESPPS I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-36	5	108	9	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-36	5	108	9	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK30603.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020879137.1	1e-109	LOB domain-containing protein 31
Swissprot	O81322	1e-100	LBD31_ARATH; LOB domain-containing protein 31
TrEMBL	A0A087GL51	1e-154	A0A087GL51_ARAAL; Uncharacterized protein
STRING	A0A087GL51	1e-155	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	3e-94	LOB domain-containing protein 31