PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

KFK30394.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

GeBP

Protein Properties

Length: 387aa MW: 44515.9 Da PI: 4.2285

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK30394.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	91.3	1.1e-28	68	159	6	97
DUF573 6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +++De+++L+G+ d++++t+ s+ +++dafy f+k+si+++++k+ql +Kir+LKk+f+++ +k+ +gk psf+++++++if+ls+ iWg KFK30394.1 68 TLTKNDELLILKGIEDYEEETKLSYRSEWDAFYAFIKDSIELNFTKEQLRSKIRKLKKRFTDNLAKSGHGKGPSFNNSNEEEIFQLSMVIWG 159 4799***************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.9E-23	70	159	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MDSIDSDDSD INRFEIRIND RASSLSSQLT RKRDDDEEEV SDQETKLIKK PRTSTTTLVT 60 SSTPSKITLT KNDELLILKG IEDYEEETKL SYRSEWDAFY AFIKDSIELN FTKEQLRSKI 120 RKLKKRFTDN LAKSGHGKGP SFNNSNEEEI FQLSMVIWGE KNEIECASNV NMDQATDSAI 180 VEHEQIKENV ELAKDATSVE LESINENVEQ EKADLTNVEH EHVSENVAQA EELTCVEHEQ 240 ITQNIEQPKD FTNVEHEQSN ENVEQAEDVT HVEREQINEN MAQAEDATYV EHEQITENME 300 QTKVDNGENE TNNEKVGAEE FSVLQDAFEA TLFPRLDTTH QKLMLENLRN LKAEKGKELT 360 EEWKTLLVEE IKFNVMKLTF SAKLVEA

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MDSIDSDDSD INRFEIRIND RASSLSSQLT RKRDDDEEEV SDQETKLIKK PRTSTTTLVT  60
SSTPSKITLT KNDELLILKG IEDYEEETKL SYRSEWDAFY AFIKDSIELN FTKEQLRSKI  120
RKLKKRFTDN LAKSGHGKGP SFNNSNEEEI FQLSMVIWGE KNEIECASNV NMDQATDSAI  180
VEHEQIKENV ELAKDATSVE LESINENVEQ EKADLTNVEH EHVSENVAQA EELTCVEHEQ  240
ITQNIEQPKD FTNVEHEQSN ENVEQAEDVT HVEREQINEN MAQAEDATYV EHEQITENME  300
QTKVDNGENE TNNEKVGAEE FSVLQDAFEA TLFPRLDTTH QKLMLENLRN LKAEKGKELT  360
EEWKTLLVEE IKFNVMKLTF SAKLVEA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK30394.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A087GKJ2	0.0	A0A087GKJ2_ARAAL; Uncharacterized protein
STRING	A0A087GKJ2	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12440	15	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	1e-55	DNA-binding storekeeper protein-related transcriptional regulator