PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30344.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family G2-like
Protein Properties Length: 311aa    MW: 35800.3 Da    PI: 6.1057
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30344.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.6e-31182236256
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 +r+rW++eLH++Fv+a+++LGGs++AtPk+i+elm+++gLt+++vkSHLQkYR++
  KFK30344.1 182 QRRRWSQELHRKFVDALHKLGGSQVATPKQIRELMQIDGLTNDEVKSHLQKYRMH 236
                 8****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.585178238IPR017930Myb domain
SuperFamilySSF466894.22E-18179239IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-27179239IPR009057Homeodomain-like
TIGRFAMsTIGR015578.2E-25182236IPR006447Myb domain, plants
PfamPF002497.8E-9183234IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGLNLNLSMY SLAKPLSQFL DEVSRIQDNH SKLFEIDGYV EKLEEEKKKI DVFKRELPLC  60
MLLITEAIEA LKEEGRRGVT NGKFDVGERA KSETDNKKNW MSSAQLWISN TNSTNEEEED  120
RSVMTTTQGG VFPSFYIPPP PPQALPPVPL SMMSQTSEMM IDQNHFNKAL QNHHHHSMKK  180
EQRRRWSQEL HRKFVDALHK LGGSQVATPK QIRELMQIDG LTNDEVKSHL QKYRMHIRKH  240
PPSDQPESQS LISLTRSDSP QSPLVERGLF GGHSSEEAEE EEEEEEEKSD GRSSWKNEVL  300
KKKRQGLDLE L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-13183234455Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-13183234455Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-12183234354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-12183234354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-12183234354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-12183234354Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-13183234455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-13183234455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-13183234455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-13183234455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-13183234455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-13183234455Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00475DAPTransfer from AT4G37180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30344.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3166642e-56AK316664.1 Arabidopsis thaliana AT4G37180 mRNA, complete cds, clone: RAFL06-70-N17.
GenBankATU627412e-56U62741.1 Arabidopsis thaliana putative cytoskeletal protein mRNA, complete cds.
GenBankAY0398412e-56AY039841.1 Arabidopsis thaliana AT4g37180/C7A10_180 mRNA, partial cds.
GenBankBT0289852e-56BT028985.1 Arabidopsis thaliana At4g37180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013617177.11e-141PREDICTED: uncharacterized protein LOC106323631
SwissprotF4JRB01e-134HHO5_ARATH; Transcription factor HHO5
TrEMBLA0A087GKE20.0A0A087GKE2_ARAAL; Uncharacterized protein
STRINGA0A087GKE20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-132G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]