PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30320.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HSF
Protein Properties Length: 283aa    MW: 31241.8 Da    PI: 5.8132
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30320.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.8e-36161072102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d ++++++sw+e+g++fvv+++ efak++Lp+yFkh+nf+SF+RQLn+YgF+k+  e+         weF++++Fk+g+++ll++i+
    KFK30320.1  16 FLSKTYQLVDDVKTDDVVSWNEDGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPEK---------WEFANDNFKRGQEDLLSEIR 103
                   9***************************************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ks
    KFK30320.1 104 RRKS 107
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-38699IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.2E-5812105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.48E-3313105IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.2E-201639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3216105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-205466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MTVATTATTR SVPAPFLSKT YQLVDDVKTD DVVSWNEDGT AFVVWKTAEF AKDLLPQYFK  60
HNNFSSFIRQ LNTYGFRKTV PEKWEFANDN FKRGQEDLLS EIRRRKSVIA AAGKCVPTSS  120
PSESNSAGGD DHGSSSTSSP GSKNPGSVEN MVADLSGENE KLKKENNSLS SELAAAKKQR  180
DELVTFLTEQ MKVGPEQIEK MINGGKFTTE EFNSDCEGCG GDEEEGVGGE LKLFGVWVKG  240
ERKKRGRDEI INNKSFVVGG SHMTEMKNVD FHAPLWKSSK VCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-25610520129Heat shock factor protein 1
5d5v_B3e-25610520129Heat shock factor protein 1
5d5v_D3e-25610520129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30320.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:9645433}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138768.11e-161PREDICTED: heat stress transcription factor B-1
SwissprotQ963201e-145HSFB1_ARATH; Heat stress transcription factor B-1
TrEMBLA0A087GKB80.0A0A087GKB8_ARAAL; Uncharacterized protein
STRINGA0A087GKB80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61012546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-135heat shock factor 4
Publications ? help Back to Top
  1. Weng M, et al.
    Histone chaperone ASF1 is involved in gene transcription activation in response to heat stress in Arabidopsis thaliana.
    Plant Cell Environ., 2014. 37(9): p. 2128-38
    [PMID:24548003]
  2. Nagashima Y,Iwata Y,Ashida M,Mishiba K,Koizumi N
    Exogenous salicylic acid activates two signaling arms of the unfolded protein response in Arabidopsis.
    Plant Cell Physiol., 2014. 55(10): p. 1772-8
    [PMID:25138441]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]
  4. Hossain MA, et al.
    Identification of Novel Components of the Unfolded Protein Response in Arabidopsis.
    Front Plant Sci, 2016. 7: p. 650
    [PMID:27242851]
  5. Röth S,Mirus O,Bublak D,Scharf KD,Schleiff E
    DNA-binding and repressor function are prerequisites for the turnover of the tomato heat stress transcription factor HsfB1.
    Plant J., 2017. 89(1): p. 31-44
    [PMID:27560701]
  6. Xu G, et al.
    uORF-mediated translation allows engineered plant disease resistance without fitness costs.
    Nature, 2017. 545(7655): p. 491-494
    [PMID:28514448]