PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30196.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 262aa    MW: 28360.8 Da    PI: 4.7904
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30196.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-05137158223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 +C++Cg+ F ++     H+r+H
  KFK30196.1 137 VCKICGRGFGSWNAVFGHMRSH 158
                 6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.016136163IPR007087Zinc finger, C2H2
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MSNPEKMKEV DDTEEKKEDS DEQWSDEESA MREIVLALPA LRISSERFGV STDDAEEEEE  60
VRLNEQAVVA AQLVMAAAEE AVMKEKSDGK KKKKRPKKLK KLEDKPSGSS TKAVVELKKT  120
KKKKGSELTN PRIGPPVCKI CGRGFGSWNA VFGHMRSHKD RNNQGFIPPP KFSAVTGGFT  180
IPGPNSAFVR VTAGVGVGVL VAAGGGAGGS GGEGGRGGGI DLNVDLVEEE DQEMNESEAM  240
ERFDLNKSPP KDEEEEEEEK AK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18997KKKKKRPKK
289100KKKKKRPKKLKK
39097KKKKRPKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30196.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592252.19e-92PREDICTED: zinc finger protein ZAT9
RefseqXP_013649612.22e-91uncharacterized protein LOC106354258
TrEMBLA0A087GJZ40.0A0A087GJZ4_ARAAL; Uncharacterized protein
STRINGA0A087GJZ40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.12e-33C2H2 family protein