PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30169.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 305aa    MW: 33752.9 Da    PI: 8.9282
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30169.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00099178200123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C+k+F ++  L  H  +H
  KFK30169.1 178 FECGGCNKVFGSHQALGGHRASH 200
                 89************999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139129.9E-880104IPR007087Zinc finger, C2H2
PROSITE profilePS501579.59880107IPR007087Zinc finger, C2H2
SMARTSM003550.02180102IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.33E-781102No hitNo description
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SuperFamilySSF576672.33E-7173200No hitNo description
PfamPF139125.6E-8177201IPR007087Zinc finger, C2H2
PROSITE profilePS501579.972178205IPR007087Zinc finger, C2H2
SMARTSM003551.4178200IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280180200IPR007087Zinc finger, C2H2
PfamPF139123.9E-11241265IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494241268IPR007087Zinc finger, C2H2
SMARTSM003550.11241263IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MTNNNSDSDP NFHIPLNPSP SNAIIPINPN PNLQFALSPR YENSPKKKRS KTVASSSTSS  60
PKPKPKYTKK PDPNAPKITR PCTECGKQFW SWKALFGHMR CHPERQWRGI NPPPNHRGHT  120
SIPSSSNKRR RSPDWLSLSE EEHEVASWLL MLCNAPPPPP PQQPPQSLLP PPPSIERFEC  180
GGCNKVFGSH QALGGHRASH KNVKGCFAIT NVNDDAMTVT TASTSNEQDH QGRMVTFSGN  240
HKCNICFRVF SSGQALGGHM RCHWEREEET SIRGGGLDLN VPATVQDSST NLDTSECSLD  300
LSLRL
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30169.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412124.11e-150zinc finger protein ZAT3
SwissprotO654991e-133ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A087GJW70.0A0A087GJW7_ARAAL; Uncharacterized protein
STRINGA0A087GJW70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-109C2H2-like zinc finger protein