PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30080.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 356aa    MW: 40903.7 Da    PI: 4.7777
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30080.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-163761897
                --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                +p ++ +e   +++ +kt++l+  sg  W+vkl  +  ++++++++GW++Fv++n L +g+f++F ++g++ f   v+++
  KFK30080.1  3 IPISYYDEL--PSRLPKTVILQGASGGIWNVKL--KYEQDEVYFGQGWSKFVRDNSLTDGEFLTFAYNGDRIF--EVSIY 76
                666666554..466999****************..888888**************************998888..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100173.35E-16177No hitNo description
PROSITE profilePS5086316.327179IPR003340B3 DNA binding domain
SMARTSM010192.6E-10179IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-19181IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-13276IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-19281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-5257343IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.92262354IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MLIPISYYDE LPSRLPKTVI LQGASGGIWN VKLKYEQDEV YFGQGWSKFV RDNSLTDGEF  60
LTFAYNGDRI FEVSIYRLDA CKEIGAVSEV DDDKEDSVCL TTSDDSESET ILRSKNKGKS  120
KVEVVKDSDE EEDSVYALSD EEDTETDTCS EVKIVNNIQR SKNKGKEIVK SSDEDSDSDY  180
IEAFGSLDLE ENSYSENSYS SDSEYEAATY AKPKAKNLKK KGKSKSNDDE NATSSLVQKR  240
TKVKAKIKNP EKYLDDPKNI HFETGVKNRT YELYILRQLV KDYNLMFPNH IKYIDDIGSF  300
EVRAIQWSDL RVCIKDWNVI CERNNVKKED RILCELFRKK NLVYAVKIHI IRGKDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-1338126104At1g16640
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217223LKKKGKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005760.11e-127B3 domain-containing protein At4g34400
SwissprotQ9SZ051e-100Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLA0A087GJM80.0A0A087GJM8_ARAAL; Uncharacterized protein
STRINGA0A087GJM80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.12e-45B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]