PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29766.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 929aa    MW: 105495 Da    PI: 6.9351
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29766.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.6e-1624991395
                TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3 13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                s+ l +p  ++++h +   ++kt +l++  s  +Wevk+  + ++    lt+GWkeFv+a++L+ gD+vvF+++g+  f  +v+
  KFK29766.1 24 SH-LNIPVAYFSKHVKGRYQHKTAKLRSdASDTTWEVKI--DDGR---RLTGGWKEFVEAHDLRIGDVVVFRHEGDLVF--HVT 99
                44.89*********444568889999987889*******..6666...49**********************8876555..555 PP
2B369.54.5e-22216306598
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 l+p ++l+ + l+lpk+f++++g+k e+s +++l++e+g +W++ l+  k+ + +v+++GW +F++ang+k++D ++Fkl++ +e+++v+ ++ 
  KFK29766.1 216 LVP-SSLRDDTLYLPKEFVRSNGLKDECS-EIVLKNEKGGRWNLVLRRIKSNNYMVISRGWTSFCEANGIKVRDPFMFKLVR-TEGKPVLCLCP 306
                 544.5566778**************9998.****************88888888**************************98.88889999986 PP
3B354.32.5e-174685441395
                 TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 ++ l +p +f+++h +   ++kt++l++  s  +Wev++  + ++    lt+GWkeFv+a++L++gD++vF+++g+  f  +v+
  KFK29766.1 468 NSYLNIPVTFFSKHVKGRYQHKTVKLRSdASDTTWEVNI--DDGQ---RLTGGWKEFVEAHDLRVGDVIVFRHEGDLVF--HVT 544
                 45699*********55556889****997888*******..5544...49**********************8876555..555 PP
4B354.62e-17602694499
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 v ++ ++l+ + +++p +f++++g++k + k++ l de grsW++ l ++k++++++l+ GW++F++ang++ g   +Fkl++ ++++lv++++++
  KFK29766.1 602 VNVSVSYLRDDKVYVPISFVRSNGLIK-SYKKVLLLDEMGRSWNLSLDHDKSGNHTYLRYGWRSFCNANGMNRGRY-MFKLIR-NSGTLVIRLCQA 694
                 566778899999************997.568*******************************************96.9***98.77779*999986 PP
5B351.91.4e-16830925199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f++ +++++  ks+ l lp +f++ +g+k  +  ++tl  ++g  W + +  + + gr+ l++ Wk+F++ +g+k g+++v++l++++++++v+k+++k
  KFK29766.1 830 FVTLTITPYFIKSNKLLLPLRFTRVNGIK-VG--EITLLGQDGVNWMLSVVKETSYGRMRLGRDWKGFCEVHGVKIGESFVLELIWDNDASPVLKFCNK 925
                 788899*****************888766.45..6***************99999999**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.9E-228106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-209111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.53411104IPR003340B3 DNA binding domain
CDDcd100172.21E-141399No hitNo description
SMARTSM010193.6E-2214104IPR003340B3 DNA binding domain
PfamPF023625.5E-112693IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-19207307IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-22207308IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-20211306No hitNo description
PROSITE profilePS5086315.298211308IPR003340B3 DNA binding domain
SMARTSM010191.4E-29212308IPR003340B3 DNA binding domain
PfamPF023622.4E-20216306IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-4387438IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-24453551IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-22454556IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.267456549IPR003340B3 DNA binding domain
CDDcd100175.66E-16457544No hitNo description
SMARTSM010197.8E-23459549IPR003340B3 DNA binding domain
PfamPF023627.6E-12469538IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-17593692IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-16595694IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.324599695IPR003340B3 DNA binding domain
SMARTSM010196.8E-20600695IPR003340B3 DNA binding domain
PfamPF023622.1E-16600694IPR003340B3 DNA binding domain
CDDcd100171.35E-12607692No hitNo description
Gene3DG3DSA:2.40.330.109.5E-6700752IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-6701749IPR015300DNA-binding pseudobarrel domain
CDDcd100177.41E-6705750No hitNo description
SMARTSM010190.38706795IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.0E-15823925IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-16826923IPR015300DNA-binding pseudobarrel domain
CDDcd100172.14E-13830914No hitNo description
SMARTSM010197.0E-24830926IPR003340B3 DNA binding domain
PfamPF023621.6E-16830925IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041830926IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 929 aa     Download sequence    Send to blast
MEDQVLQSPT NSHFFQPLLP GLYSHLNIPV AYFSKHVKGR YQHKTAKLRS DASDTTWEVK  60
IDDGRRLTGG WKEFVEAHDL RIGDVVVFRH EGDLVFHVTA LGPSCCEIEY TSSHNIGDDD  120
NKDNIASEMR PMKKRVKKNP RTIEASSSDH SCFVVNVTLS NIRADKLYVL FCNANGMNRG  180
QYMFKLVRNS GTPVIRLCQA EYRHEGDTNS YFVRSLVPSS LRDDTLYLPK EFVRSNGLKD  240
ECSEIVLKNE KGGRWNLVLR RIKSNNYMVI SRGWTSFCEA NGIKVRDPFM FKLVRTEGKP  300
VLCLCPTTES NHDTSLVECS EAESVNSLST NPSSGEESSE TEESEENSIE DITVKEESEE  360
VSIEDKISLR ECLNIKKRKY SLSAGASSSS SQNRFVTLTI TPYSIKSNKL RLPLRFTRVN  420
GMKVGKVTLL GQDGVKWMIL EVFETMEDQV LESPTNPHFF QPLLPGFNSY LNIPVTFFSK  480
HVKGRYQHKT VKLRSDASDT TWEVNIDDGQ RLTGGWKEFV EAHDLRVGDV IVFRHEGDLV  540
FHVTALGPSC CEIEYSSAQN IDDDSDGYKD NIASEIRPMK KRAKKNPRTI EDSSSDHSCF  600
VVNVSVSYLR DDKVYVPISF VRSNGLIKSY KKVLLLDEMG RSWNLSLDHD KSGNHTYLRY  660
GWRSFCNANG MNRGRYMFKL IRNSGTLVIR LCQAEYRHES DRHSYFVRSL TPSSLGDDTL  720
YLPRKFVRSN GLKKECGEIV LKNENESNHE TSVVECSEAE SVSSLSTNSS SGEESSETKE  780
SEENSIEDIT IKEENEEESM EDKSSLRECL NIKKWKYSSS ASSSLSQNRF VTLTITPYFI  840
KSNKLLLPLR FTRVNGIKVG EITLLGQDGV NWMLSVVKET SYGRMRLGRD WKGFCEVHGV  900
KIGESFVLEL IWDNDASPVL KFCNKVNSV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29766.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013655634.20.0B3 domain-containing protein REM17
RefseqXP_022557600.10.0B3 domain-containing protein REM17
TrEMBLA0A087GIR40.0A0A087GIR4_ARAAL; Uncharacterized protein
STRINGA0A087GIR40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-102B3 family protein