PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK29528.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HSF
Protein Properties Length: 332aa    MW: 37917.9 Da    PI: 5.972
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK29528.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.3e-35651562102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++ei++d+ ++ ++sws + +sf+++d+++f++++LpkyFkhsnf+SFvRQLn+YgF+kv++++         weF+++ F++gkk+ll++ik
    KFK29528.1  65 FLRKTFEIVDDAVTDPVVSWSPTRKSFIIWDSHKFSENLLPKYFKHSNFSSFVRQLNTYGFRKVDSDR---------WEFANEGFQQGKKHLLKNIK 152
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
    KFK29528.1 153 RRSK 156
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3661154IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-3261154IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-5761154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-186588IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-3165154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-18103115IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340104128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-18116128IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MTAEAETVTV NGEKTVIVDT AVVTTGIGSS CCSTSSDVVE TAKPDEVASG VDAVNFNFEM  60
GPTPFLRKTF EIVDDAVTDP VVSWSPTRKS FIIWDSHKFS ENLLPKYFKH SNFSSFVRQL  120
NTYGFRKVDS DRWEFANEGF QQGKKHLLKN IKRRSKINSN KDASTTGLGL ENETDVESLK  180
KDQSSMRLEI LKLKQQQEES HHQMTTVEEK IHRVESKQQH MLSFFAKLAK DQRLVERLMK  240
KRKLKQQREL EAAEFVKKLK LLQDQETQED LLDVESEIFK EALAMAVTQP DPESDIIMNY  300
ENMNTRCQLN ADELLGSKTI VDVNGREDSK RI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-23471543129Heat shock factor protein 1
5d5v_B9e-23471543129Heat shock factor protein 1
5d5v_D9e-23471543129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147153LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtSeed-specific transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Seems to be specialized for the developmental expression of heat shock protein (HSP) genes during seed maturation. Activated by ABI3. {ECO:0000269|PubMed:17220197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK29528.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446368.11e-136PREDICTED: heat stress transcription factor A-9-like
RefseqXP_010446377.11e-136PREDICTED: heat stress transcription factor A-9-like
SwissprotQ9LVW21e-137HSFA9_ARATH; Heat stress transcription factor A-9
TrEMBLA0A087GI260.0A0A087GI26_ARAAL; Uncharacterized protein
STRINGA0A087GI260.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.11e-113heat shock transcription factor A9