PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

KFK29425.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

bHLH

Protein Properties

Length: 375aa MW: 40958.5 Da PI: 5.585

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK29425.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.4	4.6e-07	262	301	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rRR+ri++++ L+el+P++ + a +L A eY+ksLq KFK29425.1 262 RRRERIKERMIALQELIPHC-----NASNTALMLDDAAEYMKSLQ 301 9****************8.....357899***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.96E-8	249	305	No hit	No description
PROSITE profile	PS50888	11.357	251	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-5	255	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.02E-12	262	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-12	262	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MIPIYHPKIL FYFSSLNLIN IIIIMGEDEL LWKSGQAEGP TSDPPILRGS GSGGEGEGTA 60 PFPFSPLCHQ SLFFHEPEMA SSSSSWLHHQ SFYPGVAYTP AMQPQGSVSL AQPPPSAPYH 120 PPVENLTGQF FAATRAENLM NVSSLRGNIS GPSIPMVREL TQVGSSSATE YTPVTEGTKT 180 PPTVTGGVLH TFVVPGLGRM EKAVVIETKA ETEPVRIQPA TETESADDKK REETEETEET 240 EEAAGSTPRK KSRATEMHKL SRRRERIKER MIALQELIPH CNASNTALML DDAAEYMKSL 300 QMQIQMMSMG CSLMPATYTS QFMPRMVMGM NRPPSTPFPG TPPFPSQAHM ASLADATTFS 360 IVESNNITAE FHPGK

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MIPIYHPKIL FYFSSLNLIN IIIIMGEDEL LWKSGQAEGP TSDPPILRGS GSGGEGEGTA  60
PFPFSPLCHQ SLFFHEPEMA SSSSSWLHHQ SFYPGVAYTP AMQPQGSVSL AQPPPSAPYH  120
PPVENLTGQF FAATRAENLM NVSSLRGNIS GPSIPMVREL TQVGSSSATE YTPVTEGTKT  180
PPTVTGGVLH TFVVPGLGRM EKAVVIETKA ETEPVRIQPA TETESADDKK REETEETEET  240
EEAAGSTPRK KSRATEMHKL SRRRERIKER MIALQELIPH CNASNTALML DDAAEYMKSL  300
QMQIQMMSMG CSLMPATYTS QFMPRMVMGM NRPPSTPFPG TPPFPSQAHM ASLADATTFS  360
IVESNNITAE FHPGK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK29425.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001320083.1	3e-82	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q9SVU6	3e-83	BH023_ARATH; Transcription factor bHLH23
TrEMBL	A0A087GHS3	0.0	A0A087GHS3_ARAAL; Uncharacterized protein
STRING	A0A087GHS1	0.0	(Arabis alpina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28800.1	2e-51	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]