PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

ERF

Protein Properties

Length: 217aa MW: 24692.7 Da PI: 7.6022

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK29338.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.8	6.4e-19	67	117	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++ + kl+g+ KFK29338.1 67 LYRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDRQAFKLRGH 117 59**999.******954...4************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	8.14E-33	66	126	No hit	No description
Gene3D	G3DSA:3.30.730.10	4.0E-32	67	125	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.94E-23	67	125	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.67	67	124	IPR001471	AP2/ERF domain
SMART	SM00380	4.3E-38	67	130	IPR001471	AP2/ERF domain
Pfam	PF00847	9.6E-14	68	117	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-11	68	79	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.7E-11	90	106	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MQGRKQIISF SPQHAPFLNA DKGGALVQEQ QKQYMLKYWS DTLNLSPRGR MMMMSQEAIQ 60 PYSATKLYRG VRQRQWGKWV AEIRKPRSRA RLWLGTFDTA EEAAMAYDRQ AFKLRGHNAT 120 LNFPELFANK ETELQDSTTD SLDQKQSERP QPSEANLVSK EMVVSDGVRE DGMAEAWFNA 180 VTAGWGPESP LWDDLDSSHF AQNSSSSSAS CPMRPFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-21	66	124	4	63	ATERF1
3gcc_A	3e-21	66	124	4	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00458	DAP	Transfer from AT4G28140	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK29338.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872099.1	1e-107	ethylene-responsive transcription factor ERF054
Swissprot	Q9M0J3	1e-102	ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBL	A0A087GHI6	1e-161	A0A087GHI6_ARAAL; Uncharacterized protein
STRING	A0A087GHI6	1e-161	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2141	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28140.1	1e-103	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]