PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK29142.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 349aa MW: 39448.2 Da PI: 8.8584 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.3 | 1.1e-17 | 11 | 64 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+++Le Fe+++++ e++ ++A+++gL rqV vWFqNrRa+ k KFK29142.1 11 KKRRLNAEQVKRLEGSFEEENKLEPERKVRIAEETGLHPRQVAVWFQNRRARGK 64 56689***********************************************88 PP | |||||||
2 | HD-ZIP_I/II | 117.7 | 6.5e-38 | 10 | 99 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl++eqvk LE sFeee+kLeperKv++a+e gl+prqvavWFqnrRAR ktkqlE+dye+Lk++yd+lk + +L++e + L+++ KFK29142.1 10 EKKRRLNAEQVKRLEGSFEEENKLEPERKVRIAEETGLHPRQVAVWFQNRRARGKTKQLERDYEVLKAHYDSLKLDYGNLQHERQVLTSK 99 69***********************************************************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.872 | 6 | 66 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-16 | 9 | 70 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.52E-14 | 11 | 67 | No hit | No description |
SuperFamily | SSF46689 | 7.27E-17 | 11 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.1E-15 | 11 | 64 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-18 | 13 | 73 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 41 | 64 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.4E-12 | 66 | 99 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MEEDTFSLAE KKRRLNAEQV KRLEGSFEEE NKLEPERKVR IAEETGLHPR QVAVWFQNRR 60 ARGKTKQLER DYEVLKAHYD SLKLDYGNLQ HERQVLTSKE QSTSLTEQMV PTCHKGWCSS 120 SCSGSGLTAE PCRFGNYPHK EINMVELEEL RNLKSLEYDP HLQCISCLPV GMLTKAGASY 180 VVIVSSLTIS VAGLRWGGLD LSLASFADPD LMKIRSASLH RFSFTFYGGL VVVASDGSVS 240 LSGGDVSREL EPPDADDTGS ALFLGYAVMF FLSTTRLMAA VCTRTRSFLR GVEARPQRQQ 300 KPLCRRRHYS CVRSRVFFCL RFTSGLWVYP VRVFTKPGRV FGFNVACLF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 58 | 66 | RRARGKTKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK29142.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A087GGZ0 | 0.0 | A0A087GGZ0_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GGZ0 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM25291 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65310.2 | 1e-32 | homeobox protein 5 |