PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28228.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Dof
Protein Properties Length: 312aa    MW: 34758.5 Da    PI: 8.8206
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28228.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.28.7e-393594261
      zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                 +++lkcprC+s ntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvP+Ggg+rk kks
  KFK28228.1 35 DQQTLKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKS 94
                57899****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027019.2E-333793IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4323993IPR003851Zinc finger, Dof-type
ProDomPD0074789.0E-283993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSSHTNLPSP KPIPKPDHRT SQTKKPPSSS VSPQDQQTLK CPRCNSPNTK FCYYNNYSLS  60
QPRHFCKSCR RYWTRGGALR NVPIGGGCRK TKKSIKPNSI TPSSSSQRFF SSIMEDSSKY  120
FPPPSTMDFQ LAGLSLNKIN DLQLFNNNQE VLALRTLEQE TTQVDHVGSG LTLMGFGDYN  180
NNNNNNYTTG AGGETTGNLA TSIETLSCLN QDLHWRLQQQ RMAMLFGNSK EETVVVERPQ  240
PILYRNLEIV SSSPSSPMKK GENQTEWYFG NNNDNEGVIS NNGNTTGGGG SDQWNNGNIQ  300
AWTDLNHYNA MP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28228.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022543303.11e-171dof zinc finger protein DOF5.7-like
SwissprotQ9LSL61e-169DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBLA0A087GEC60.0A0A087GEC6_ARAAL; Uncharacterized protein
STRINGA0A087GEC60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49502850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.11e-145Dof family protein
Publications ? help Back to Top
  1. Castorina G,Fox S,Tonelli C,Galbiati M,Conti L
    A novel role for STOMATAL CARPENTER 1 in stomata patterning.
    BMC Plant Biol., 2016. 16(1): p. 172
    [PMID:27484174]