PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28206.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB
Protein Properties Length: 310aa    MW: 34803.1 Da    PI: 6.3705
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28206.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.6e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+++++++G  +W+  ++  g++R++k+c++rw +yl
       KFK28206.1 14 KGPWTPEEDDKLINYIHKHGHSSWSGLPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding521.6e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ +++ ++ lG++ W+ Ia++++ gRt++++k++w+++l
       KFK28206.1  67 RGKFSPEEEQTILNNHAVLGNK-WSMIASHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.85961IPR017930Myb domain
SuperFamilySSF466891.09E-3011108IPR009057Homeodomain-like
SMARTSM007176.8E-151363IPR001005SANT/Myb domain
PfamPF002492.9E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-251568IPR009057Homeodomain-like
CDDcd001672.63E-121661No hitNo description
PROSITE profilePS5129426.55562116IPR017930Myb domain
SMARTSM007171.2E-1566114IPR001005SANT/Myb domain
PfamPF002497.3E-1567112IPR001005SANT/Myb domain
CDDcd001674.75E-1269112No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2769117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRSPSSDET GLKKGPWTPE EDDKLINYIH KHGHSSWSGL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SPEEEQTILN NHAVLGNKWS MIASHLPGRT DNEIKNFWNT HLKKKLINMG  120
FDPMTHRPRT DDIFSSFSQL LSLSNLRGLV GMQQQQVPIE DQALLNLQAE MAKLQLLHYF  180
LQPPPSINPN DLNILNLLIK ENSITSNPDL GFLTAYLQDF NNNLPSLKTI GENFSQNNSP  240
IWLHEPPSLN QTMLPSHDPS ALSDDLARNV DGFGCNQASS SHDQELAATG SGSVDLPDHF  300
FDDSILPYQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28206.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196460.0AY519646.1 Arabidopsis thaliana MYB transcription factor (At5g65230) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444505.11e-171PREDICTED: transcription factor MYB39-like
RefseqXP_010484333.11e-171PREDICTED: transcription factor MYB39-like
RefseqXP_010484334.11e-171PREDICTED: transcription factor MYB39-like
RefseqXP_010484336.11e-171PREDICTED: transcription factor MYB39-like
RefseqXP_019095871.11e-171PREDICTED: transcription factor MYB39-like
SwissprotQ9FJP21e-161MYB53_ARATH; Transcription factor MYB53
TrEMBLA0A087GEA40.0A0A087GEA4_ARAAL; Uncharacterized protein
STRINGA0A087GEA40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65230.11e-159myb domain protein 53
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]