PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27929.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HSF
Protein Properties Length: 293aa    MW: 33111.1 Da    PI: 6.0669
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27929.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.61.5e-36291192101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+++++ed++++++isw+e+g+sf+v+++++fak++Lpk+Fkh+nf+SFvRQLn+YgFkkv  ++         weF++++F++g+k+ll++i+
    KFK27929.1  29 FLIKTFNLVEDPSINDIISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNDYFRRGEKRLLREIQ 116
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
    KFK27929.1 117 RRK 119
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-3820112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-5625118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.52E-3526118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.1E-3229118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-182952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-188092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MNPTLDHSDN SESAMVTVTE SQRSVPTPFL IKTFNLVEDP SINDIISWNE DGSSFIVWNP  60
TDFAKDLLPK HFKHNNFSSF VRQLNTYGFK KVVPDRWEFS NDYFRRGEKR LLREIQRRKL  120
THPSPETMAV NQRIQTAIKP VLSPSNSGEE QPVSPSSWYC QTGTGLSVEL LEENEKLRIQ  180
NIQLNRELSQ MKSLCDNIFN LMSSYAGSSS GSHDVVKPVE FLPAKVVVEE EEEEEASPRL  240
FGVPIGLKRT RSEGVQVKSS VRGENSGGGN GGGVEETTPW LRYCNRVNQR VCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-222911829129Heat shock factor protein 1
5d5v_B1e-222911829129Heat shock factor protein 1
5d5v_D1e-222911829129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27929.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013718121.11e-147heat stress transcription factor B-2a-like
SwissprotQ9SCW41e-129HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A087GDH70.0A0A087GDH7_ARAAL; Uncharacterized protein
STRINGA0A087GDH70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-123heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]