PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK27847.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Dof

Protein Properties

Length: 287aa MW: 30441.2 Da PI: 7.5298

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK27847.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.7	1.2e-38	44	104	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ KFK27847.1 44 HHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSK 104 57899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-33	35	98	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.1E-33	46	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.534	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MQDIHDYSMT GGGGGRFYGG GIGGGGGGGG DRRMRAHQNN ILNHHQSLKC PRCNSLNTKF 60 CYYNNYNLSQ PRHFCKNCRR YWTKGGVLRN VPVGGGCRKA KRSKSSKQPP SPSPTSTDKP 120 TTQEAEEKSS SSESSSLTAS NTTIAAVSAT DAAVKVGSSS GFMGTDLPKL YGNGIEWSTL 180 IGQGSSDGGV FSEIGGFTAS VETTPFGFGG NSVNQMKLEG DNNTVQQQQF GDQTNMGFEP 240 LDWGSGSGGG GGDQTLFDLT STVDHAYWSH SQWTTSSDQD HNGLYLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	20	GGRFYGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK27847.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB015472	3e-80	AB015472.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1.
GenBank	AK227247	3e-80	AK227247.1 Arabidopsis thaliana mRNA for zinc finger protein OBP4 - like, complete cds, clone: RAFL11-02-A14.
GenBank	AY056413	3e-80	AY056413.1 Arabidopsis thaliana AT5g60850/mae1_100 mRNA, complete cds.
GenBank	AY081709	3e-80	AY081709.1 Arabidopsis thaliana AT5g60850/mae1_100 mRNA, complete cds.
GenBank	AY085856	3e-80	AY085856.1 Arabidopsis thaliana clone 19080 mRNA, complete sequence.
GenBank	CP002688	3e-80	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013599441.1	1e-129	PREDICTED: dof zinc finger protein DOF5.4
Swissprot	Q8LDR0	1e-119	DOF54_ARATH; Dof zinc finger protein DOF5.4
TrEMBL	A0A087GD95	0.0	A0A087GD95_ARAAL; Uncharacterized protein
STRING	A0A087GD95	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4482	26	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	1e-103	OBF binding protein 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu P,Chen H,Ying L,Cai W AtDOF5.4/OBP4, a DOF Transcription Factor Gene that Negatively Regulates Cell Cycle Progression and Cell Expansion in Arabidopsis thaliana. Sci Rep, 2016. 6: p. 27705 [PMID:27297966] Ramirez-Parra E, et al. The transcription factor OBP4 controls root growth and promotes callus formation. New Phytol., 2017. 213(4): p. 1787-1801 [PMID:27859363] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701]