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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK27750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | HSF | ||||||||
Protein Properties | Length: 182aa MW: 21281.3 Da PI: 5.7847 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 59.6 | 8.1e-19 | 11 | 97 | 2 | 93 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHS..TT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyF..khsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 F lye+++d+++++++swse+gnsf+v++e+ef k v+p++F k + + SF+ L YgF+kv+++++ e++++ F +gk +l KFK27750.1 11 FPIVLYEMVDDPSTNSIVSWSESGNSFIVWKESEFCKVVVPSVFqrKEEDLFSFTIRLYNYGFTKVESSDEL-------YEYTNDCFVRGKPDL 97 56679***************************************44456789****************9976.......*********999864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.7E-24 | 4 | 97 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.6E-13 | 7 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.9E-20 | 11 | 97 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.6E-17 | 11 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-6 | 11 | 34 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-6 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MDRKENRNRF FPIVLYEMVD DPSTNSIVSW SESGNSFIVW KESEFCKVVV PSVFQRKEED 60 LFSFTIRLYN YGFTKVESSD ELYEYTNDCF VRGKPDLTRP KSFVFKTAPE MQRVMDRHKE 120 MVLARCLLGH EILANYLLSI WDRGSVRLQT GHKVSDMEEE TGKEALQIDI LRLGSAPMRP 180 AF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK27750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002873596.2 | 2e-27 | heat stress transcription factor A-4a | ||||
TrEMBL | A0A087GCZ8 | 1e-133 | A0A087GCZ8_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GCZ8 | 1e-134 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13231 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18870.1 | 7e-19 | HSF family protein |