PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

WRKY

Protein Properties

Length: 310aa MW: 35231.7 Da PI: 6.0504

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK27696.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.6	5.2e-28	112	173	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g++fpr+YYrCt++ gC+++k+v+rs++dp ++ei Y+g H ++ KFK27696.1 112 LDDGFSWRKYGQKDILGAKFPRGYYRCTHRksqGCEATKQVQRSDQDPILFEISYRGIHSCS 173 59*************************98899***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-26	109	174	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-24	111	174	IPR003657	WRKY domain
PROSITE profile	PS50811	22.022	112	171	IPR003657	WRKY domain
SMART	SM00774	2.1E-40	112	174	IPR003657	WRKY domain
Pfam	PF03106	7.2E-26	113	172	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009751	Biological Process	response to salicylic acid
GO:0010193	Biological Process	response to ozone
GO:0042542	Biological Process	response to hydrogen peroxide
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MEKKSSSEEW EKMKKEINEL MIEGRDYAHQ FGSASSQETR EHLAKKILES YHKSLTILNY 60 SGEPDQDSLG EGSPNSDDSD LEPRIVKSSK KSMPRWTEKV RITPEAGVDR SLDDGFSWRK 120 YGQKDILGAK FPRGYYRCTH RKSQGCEATK QVQRSDQDPI LFEISYRGIH SCSQAANVGS 180 TIRVQNLEPN QNQNQEVLEN VKESLDTDHR NYNHQSHLHQ TLHYPLPSTP ILESNHAYML 240 QMRDHNNEFF GTTSMSSDLG TNVSCDFLAS RDVGSASHST SNSPSTVRLE SPFESFDPNY 300 PFGGFGEFYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	3e-19	111	170	13	74	Disease resistance protein RRS1
5w3x_D	3e-19	111	170	13	74	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250\|UniProtKB:Q9SUP6}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00525	DAP	Transfer from AT5G24110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK27696.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA). {ECO:0000269\|PubMed:22268143}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006394669.1	1e-176	probable WRKY transcription factor 30
Swissprot	Q9FL62	1e-166	WRK30_ARATH; Probable WRKY transcription factor 30
TrEMBL	A0A087GCU4	0.0	A0A087GCU4_ARAAL; Uncharacterized protein
STRING	A0A087GCU4	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12595	19	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24110.1	1e-148	WRKY DNA-binding protein 30

Publications ? help Back to Top
Jiang W,Wu J,Zhang Y,Yin L,Lu J Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses. Protoplasma, 2015. 252(5): p. 1361-74 [PMID:25643917] Kanofsky K,Bahlmann AK,Hehl R,Dong DX Combinatorial requirement of W- and WT-boxes in microbe-associated molecular pattern-responsive synthetic promoters. Plant Cell Rep., 2017. 36(6): p. 971-986 [PMID:28341984]