PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27496.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ARF
Protein Properties Length: 941aa    MW: 104113 Da    PI: 6.3042
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27496.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.65.8e-24131232199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  KFK27496.1 131 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDKNQL 225
                 99*****************************8544444..48************************************************..7888889 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  KFK27496.1 226 LLGIRRA 232
                 ****997 PP
2Auxin_resp117.98.3e-39257340183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp+rW nS+Wrs+k
  KFK27496.1 257 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVK 340
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-48116260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-41124246IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-20130231No hitNo description
PfamPF023625.2E-22131232IPR003340B3 DNA binding domain
SMARTSM010191.9E-24131233IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464131233IPR003340B3 DNA binding domain
PfamPF065079.4E-34257340IPR010525Auxin response factor
PfamPF023093.0E-8790891IPR033389AUX/IAA domain
SuperFamilySSF542772.55E-7793877No hitNo description
PROSITE profilePS5174523.582802886IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 941 aa     Download sequence    Send to blast
MRLSSAGAGF NPQPHEVTGE KRVLNSELWH ACAGPLVSLP PVGSRVVYFP QGHSEQVAAS  60
TNKEVDAHIP NYPSLHPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLNAQE QKDPYLPAEL  120
GVPSRQPTNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL DYSQQPPAQE LMARDLHDNE  180
WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVLFIWN DKNQLLLGIR RANRPQTVMP  240
SSVLSSDSMH LGLLAAAAHA AATNSRFTIF YNPRASPSEF VIPLAKYVKA VYHTRVSVGM  300
RFRMLFETEE SSVRRYMGTI TGICDLDPTR WANSHWRSVK VGWDESTAGE RQPRVSLWEI  360
EPLTTFPMYP SPFPLRLKRP WPPGLPSFHG LKEDDMGMSM SSPLMWDRGL QSLNFQGMGV  420
NPWMQPRMDA TGLLGMQNDV YQAMAAAALQ DMRGIDPAKA AASLLQFQNP TGYSMQSPSL  480
VQPQMLQQQL SQQQQQQLSQ QQQQQLSQQQ QQQQLSQQQQ QQQQQQQLSQ QQQQQQQLSQ  540
QQQQQAYLGV PETHQPQSQA QSQSNNLLSQ QQQQQQVVEN HNPSASGAAM SQFGSASQSN  600
SSPLHSMNSM CQQQSFSDTN GGNNPISPLH TLLSNFSQDE SSQLLNLTRT NSAMTSSGWP  660
SKRPAVESSF QLSGAGNNTQ SVMEQLGQPH TSNVSPNAVS LPPFPGGREC SIEQEGSASD  720
PHSHLLFGVN IDSSSLLMPN GMSNLRSIGI EGGDSTTLPF TSSNYNNDFS GNLAMTTPSS  780
CIDESGFLQS SENLGSENQQ SNTFVKVYKS GSFGRSLDIT KFSSYHELRS ELARMFGLEG  840
QLEDPVRSGW QLVFVDREND VLLLGDDPWP EFVSSVWCIK ILSPQEVQQM GKRGLELLNS  900
APSSNNVDKL PSNGNCDDFG NRSDPRNLGN GIASVGGSFN Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1602036147388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27496.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6697880.0AY669788.1 Arabidopsis thaliana clone C105343 ARF6 (At1g30330) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478419.10.0PREDICTED: auxin response factor 6 isoform X3
SwissprotQ9ZTX80.0ARFF_ARATH; Auxin response factor 6
TrEMBLA0A087GC940.0A0A087GC94_ARAAL; Auxin response factor
STRINGA0A087GC940.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  2. Oh E, et al.
    Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl.
    Elife, 2015.
    [PMID:24867218]
  3. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  4. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  5. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  6. Batista VG,Pinheiro MP,Melo Filho PA,Santos RC,Lima LM
    Temporal and tissue expression of genes involved in buds of earliness cotton cultivar.
    Genet. Mol. Res., 2015. 14(3): p. 7386-94
    [PMID:26214417]
  7. Li P, et al.
    Ca(2+) -regulated and diurnal rhythm-regulated Na(+) /Ca(2+) exchanger AtNCL affects flowering time and auxin signalling in Arabidopsis.
    Plant Cell Environ., 2016. 39(2): p. 377-92
    [PMID:26296956]
  8. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  9. Luo S, et al.
    Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 1156
    [PMID:26734051]
  10. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  11. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  12. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]