PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27358.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 271aa    MW: 30886.9 Da    PI: 10.191
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27358.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.91.6e-17132221198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f+k +++s+v +  +l lp +f+ +h  +k ++ +++lede+g+++e  +   +++ +  l++GWk+F+ +++L++gD v+F l++    ++++ vfr
  KFK27358.1 132 FVKSMVRSHVYSCFWLGLPSRFCVDHL-PK-GTEEMILEDEKGEEYEAVY--IGTRTG--LSGGWKRFALDHKLDDGDAVLFVLVE--PLRFKIYVFR 221
                 89************************4.32.4569***************..455433..***********************976..4555888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-20123221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-23125222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-25130221No hitNo description
PfamPF023623.8E-16132221IPR003340B3 DNA binding domain
SMARTSM010191.0E-24132223IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929132223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAYEEARKLR LEENHKRLQD LGISQISKSL TQISTKTPSK QRISRPIDKT TTVSEPRRSS  60
RARTNITSYR DDVGVDTVRT LSRRKSRRNS SWASYIARPL EECKFASYEE KVGALKAAEE  120
FQSSLESPHP SFVKSMVRSH VYSCFWLGLP SRFCVDHLPK GTEEMILEDE KGEEYEAVYI  180
GTRTGLSGGW KRFALDHKLD DGDAVLFVLV EPLRFKIYVF RGSENINPTS ARKRGKAKQR  240
DEDKDVKESC DEGGSSGATK RSSARLRKRR A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230236ARKRGKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27358.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453458.11e-131PREDICTED: putative B3 domain-containing protein At5g58280
RefseqXP_020878355.11e-131putative B3 domain-containing protein At5g58280 isoform X1
SwissprotQ9FHB21e-114Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLA0A087GBV60.0A0A087GBV6_ARAAL; Uncharacterized protein
STRINGA0A087GBV60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161411214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-112B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]