PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

MYB

Protein Properties

Length: 273aa MW: 31353.2 Da PI: 9.7562

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK26915.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	20	65	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v +G+ +W+ Ia++m+ gRt+k+c++rw++ KFK26915.1 20 RGHWKPSEDFKLKELVSVFGPQNWNYIAEKMQ-GRTGKSCRLRWFNQ 65 899***************************.*********996 PP
2	Myb_DNA-binding	52.6	1e-16	75	116	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +T eE+e+l+ +++++G++ W++Ia+ ++ gRt++ +k++w+ + KFK26915.1 75 FTDEEEEKLLAVHREFGNK-WSLIAKLFN-GRTDNAVKNHWHVL 116 9****************.*****.*********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.061	15	66	IPR017930	Myb domain
SMART	SM00717	8.1E-12	19	68	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.19E-28	20	117	IPR009057	Homeodomain-like
Pfam	PF00249	4.6E-15	20	65	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-26	21	73	IPR009057	Homeodomain-like
CDD	cd00167	1.39E-10	23	64	No hit	No description
PROSITE profile	PS51294	25.578	67	121	IPR017930	Myb domain
SMART	SM00717	2.0E-14	71	119	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-21	74	121	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-14	75	116	IPR001005	SANT/Myb domain
CDD	cd00167	6.41E-11	75	117	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MHQESKKSKK KKNLSRVCSR GHWKPSEDFK LKELVSVFGP QNWNYIAEKM QGRTGKSCRL 60 RWFNQLDPRI NKRGFTDEEE EKLLAVHREF GNKWSLIAKL FNGRTDNAVK NHWHVLMARK 120 LRKQSTSYTM KSHNNTLSPH NLTSSDKTEA DNTDEVTCLN PQQTFNLFPG SAGDDKSYSW 180 KMLKEETTNL KDQYLQEEYC SSRMPMKYSG HHHQFSTFSA DSLALLTPHV SISQPSSSSS 240 SLSSSEAENT MVARYFETTL PPRFIDFLGV GAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-29	20	121	4	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	5e-29	20	121	58	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	5e-29	20	121	58	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-29	20	121	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-29	20	121	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK26915.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF272732	1e-91	AF272732.1 Arabidopsis thaliana putative transcription factor (MYB110) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013613545.1	1e-116	PREDICTED: transcriptional activator Myb-like
Refseq	XP_018463037.1	1e-116	PREDICTED: transcription factor MYB59-like
TrEMBL	A0A087GAL3	0.0	A0A087GAL3_ARAAL; Uncharacterized protein
STRING	A0A087GAL3	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6300	18	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G29020.2	1e-108	myb domain protein 110