PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26869.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB_related
Protein Properties Length: 326aa    MW: 35871.8 Da    PI: 9.4605
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26869.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-1268112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
       KFK26869.1  68 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 112
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.83E-1662118IPR009057Homeodomain-like
PROSITE profilePS5129413.75863117IPR017930Myb domain
TIGRFAMsTIGR015572.4E-1866115IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.5E-666118IPR009057Homeodomain-like
SMARTSM007179.6E-1067115IPR001005SANT/Myb domain
PfamPF002496.3E-1068112IPR001005SANT/Myb domain
CDDcd001671.39E-770113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MVTRNPNPAD GYFLDPNSIM TVPALGSFTA AVSSSPTTSS TAXXVADATA SEDLSKKIRK  60
PYTITKSRES WTEPEHDKFL EALQLFDRDW KKIEAFIGSK TVIQIRSHAQ KYFLKVQKSG  120
TGEHLPPPRP KRKAAHPYPQ KAHKNAQPQV PGSFKSTAEP NDPSYMFRPE SASMLMTSPT  180
TAAGAPWTNN MQTISFTPLP KAGANNNCSS SSENTTRPRS NRDTSDQGNL GQSLRVLPDF  240
AQVYSFIGSV FDPCASNHLQ KLKKMDPIDV ETVLLLMRNL SINLSSPDFE DHRRLLSSYD  300
IGSETKSTDL GGVSKTLNKE PPEIST
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26869.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ9372100.0AJ937210.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like2 (lcl2 gene).
GenBankAY0876900.0AY087690.1 Arabidopsis thaliana clone 37702 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401794.10.0protein REVEILLE 6 isoform X1
SwissprotQ8H0W30.0RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A087GAG70.0A0A087GAG7_ARAAL; Uncharacterized protein
STRINGA0A087GAG60.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-170MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]