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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK26767.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | Trihelix | ||||||||
Protein Properties | Length: 423aa MW: 47134.5 Da PI: 6.8916 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 63.3 | 5.7e-20 | 34 | 123 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+ aL++a+++++ +lrrg+l++++W++v+ ++ + +g +s++qC++k+e+l+kry+ +k+++ +r + ss++ +f l+ KFK26767.1 34 CWTDEETAALVNAYKDKWFSLRRGNLRAADWDDVALAVssssSIGGPPKSAIQCRHKIEKLRKRYRGEKQRALNRPGKFSSSWDLFPILD 123 8**********************************999888777888****************************9999*******9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.3E-20 | 33 | 125 | No hit | No description |
SMART | SM00595 | 0.0029 | 42 | 130 | IPR006578 | MADF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MSIADDGSPI AMAIDPSSAV TVATTTTRRV PPPCWTDEET AALVNAYKDK WFSLRRGNLR 60 AADWDDVALA VSSSSSIGGP PKSAIQCRHK IEKLRKRYRG EKQRALNRPG KFSSSWDLFP 120 ILDAMEFAPV TPAVVETYDP DLDHDDDGND GFRVRSKRSG KFSGYNESPR EVGDGFGVRS 180 RVKSQNQMKM YGGFDSDHDS GLKRKYNGNN PKVSADFDVE SDDEIVLVPK ATRFKSHGKP 240 SLGEFSHSGG GGFPLKSFGD RSFGSHGFMK PKSFSKPEAN FSPEMDYDDE YDDDQGFQPR 300 VQNSRSGSRS NGFSRKDGMY PPRNSGVSNG YGSSSRFKQE QMNAAEVESD PIDDVVSSVK 360 MLTEMFVRVE NSKMEMMREM EKTRMEMELK HCQMMLESQQ QIIGAFAEAL SEKKSTNARR 420 PLS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK26767.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013721640.2 | 0.0 | uncharacterized protein LOC106425450 isoform X2 | ||||
Swissprot | O23550 | 1e-148 | FRIP2_ARATH; Protein FIP2 | ||||
TrEMBL | A0A087GA65 | 0.0 | A0A087GA65_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GA65 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10483 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 7e-27 | Trihelix family protein |
Publications ? help Back to Top | |||
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