PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26576.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ARR-B
Protein Properties Length: 494aa    MW: 56155.9 Da    PI: 6.2453
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26576.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.27.5e-23212266156
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 k r++W  eLH++F+ aveqL G  +A+Pk+ilelm+ +++++e+v+SHLQk+R++
  KFK26576.1 212 KRRVVWEDELHKKFLAAVEQL-GLANAVPKKILELMNDPSISRENVASHLQKFRIH 266
                 689******************.9*******************************86 PP
2Response_reg45.83.2e-16381451108
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d++p+ r++l++ l++ +y +v  + + + a++ll++++  +D+ ++  + ++ d ++l++ei  e  ++p+i+++  ++ e +++ ++ Ga 
    KFK26576.1  38 VLVFDEDPVYRQVLEKHLQEFRY-QVWICNEEDRAMHLLRNHRdrFDIAIIEAQDSKGDRFRLISEIGLEM-DIPVIIMSKDDSVESVVDWMRNGAC 132
                   8999*******************.***************999999**********************6654.8************************ PP

                   EEEESS--HHHHH CS
  Response_reg  96 dflsKpfdpeelv 108
                   d+l Kp+ pe+l+
    KFK26576.1 133 DYLIKPIRPEDLR 145
                   ***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.7E-2234152IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.3E-2335159No hitNo description
SMARTSM004482.0E-1036148IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011029.21937152IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-1138146IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.84E-1239145No hitNo description
Gene3DG3DSA:1.10.10.607.5E-24209268IPR009057Homeodomain-like
SuperFamilySSF466899.14E-17209269IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-22212266IPR006447Myb domain, plants
Gene3DG3DSA:3.40.50.23005.3E-23269284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MAVKCDHRGI QTSDGGPNTD LPNSCDIVSG QFPEGLRVLV FDEDPVYRQV LEKHLQEFRY  60
QVWICNEEDR AMHLLRNHRD RFDIAIIEAQ DSKGDRFRLI SEIGLEMDIP VIIMSKDDSV  120
ESVVDWMRNG ACDYLIKPIR PEDLRMIFKH VAMKMQGRRS VAAGEAEEKV GGTVAKSSSV  180
GDSTIRNPNK RKRGIDEDHD HDRCDRTSTS KKRRVVWEDE LHKKFLAAVE QLGLANAVPK  240
KILELMNDPS ISRENVASHL QKFRIHLKKQ EEQKERDQKN ISLTTQREGR TYGGEEATDF  300
HKGGDVQFPT FHIDNIPGQP WMQQQHITNT NLTTQLVSPL GHHHLGDGVS VAVSSRNLVM  360
THHHHHTSEL ACIENTQESL GYNNFEMHNE EEAAVGNLTC LYMQNSQDLF QFHEPVMATT  420
TMIPNHHHSS ASLQMSQPMS NGHVTESAML HSPSFPSSYT HNSFLDQQEI LTMVDECGVF  480
NYDSAYSVNN NKVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-19208269162ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26576.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597017.11e-146PREDICTED: two-component response regulator ARR14
RefseqXP_013706135.11e-146two-component response regulator ARR14-like
SwissprotQ9FJ161e-109APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLA0A087G9M40.0A0A087G9M4_ARAAL; Uncharacterized protein
STRINGA0A087G9M30.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.11e-111pseudo-response regulator 4