PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26575.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ARR-B
Protein Properties Length: 496aa    MW: 56405.1 Da    PI: 6.3055
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26575.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.27.5e-23214268156
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 k r++W  eLH++F+ aveqL G  +A+Pk+ilelm+ +++++e+v+SHLQk+R++
  KFK26575.1 214 KRRVVWEDELHKKFLAAVEQL-GLANAVPKKILELMNDPSISRENVASHLQKFRIH 268
                 689******************.9*******************************86 PP
2Response_reg36.92e-13381471108
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEE..EEESTTTHHHHHHHHHTT CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpii..vvtahgeeedalealkaG 93 
                   vl+ d++p+ r++l++ l++ +y +v  + + + a++ll++++  +D+ ++  + ++ d ++l++ei  e  ++p+i  +++  ++ e +++ ++ G
    KFK26575.1  38 VLVFDEDPVYRQVLEKHLQEFRY-QVWICNEEDRAMHLLRNHRdrFDIAIIEAQDSKGDRFRLISEIGLEM-DIPVIskFMSKDDSVESVVDWMRNG 132
                   8999*******************.***************999999**********************5544.68887668999999*********** PP

                   ESEEEESS--HHHHH CS
  Response_reg  94 akdflsKpfdpeelv 108
                   a d+l Kp+ pe+l+
    KFK26575.1 133 ACDYLIKPIRPEDLR 147
                   *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.83E-1934154IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.8E-2035161No hitNo description
SMARTSM004482.4E-636150IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011026.0137154IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-838148IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.05E-1139147No hitNo description
Gene3DG3DSA:1.10.10.607.5E-24211270IPR009057Homeodomain-like
SuperFamilySSF466899.14E-17211271IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-22214268IPR006447Myb domain, plants
Gene3DG3DSA:3.40.50.23006.8E-20271286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MAVKCDHRGI QTSDGGPNTD LPNSCDIVSG QFPEGLRVLV FDEDPVYRQV LEKHLQEFRY  60
QVWICNEEDR AMHLLRNHRD RFDIAIIEAQ DSKGDRFRLI SEIGLEMDIP VISKFMSKDD  120
SVESVVDWMR NGACDYLIKP IRPEDLRMIF KHVAMKMQGR RSVAAGEAEE KVGGTVAKSS  180
SVGDSTIRNP NKRKRGIDED HDHDRCDRTS TSKKRRVVWE DELHKKFLAA VEQLGLANAV  240
PKKILELMND PSISRENVAS HLQKFRIHLK KQEEQKERDQ KNISLTTQRE GRTYGGEEAT  300
DFHKGGDVQF PTFHIDNIPG QPWMQQQHIT NTNLTTQLVS PLGHHHLGDG VSVAVSSRNL  360
VMTHHHHHTS ELACIENTQE SLGYNNFEMH NEEEAAVGNL TCLYMQNSQD LFQFHEPVMA  420
TTTMIPNHHH SSASLQMSQP MSNGHVTESA MLHSPSFPSS YTHNSFLDQQ EILTMVDECG  480
VFNYDSAYSV NNNKVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-19210271162ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26575.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597017.11e-143PREDICTED: two-component response regulator ARR14
RefseqXP_013706135.11e-143two-component response regulator ARR14-like
SwissprotQ9FJ161e-106APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLA0A087G9M30.0A0A087G9M3_ARAAL; Uncharacterized protein
STRINGA0A087G9M30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.11e-108pseudo-response regulator 4