![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KFK26563.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 595aa MW: 68594.5 Da PI: 6.6014 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.1 | 3.1e-15 | 94 | 160 | 2 | 73 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 W+ +evlaL+ +r+ +e+++ + We+ s+k++e gf+rsp++Ckek+e+ ++ry + +++ ++ ++ KFK26563.1 94 WCSDEVLALLGFRSTVENWFPEF-----TWEHTSRKLAEVGFKRSPQECKEKFEEEERRYFNSNNNTNDLSN 160 ********************998.....9*******************************999998887643 PP | |||||||
2 | trihelix | 96.2 | 3.1e-30 | 450 | 546 | 1 | 86 |
trihelix 1 rWtkqevlaLiearr............emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r m ++ +++++ plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+tcpyf+ql+ KFK26563.1 450 RWPRDEVLALINIRCsissmndddhkeGMISSPSSSSKSIPLWERISKKMLEIGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRTCPYFHQLT 546 8*************97777776554444444444567999******************************************8.9***********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.2E-10 | 92 | 155 | No hit | No description |
PROSITE profile | PS50090 | 5.215 | 93 | 145 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 5.2E-19 | 449 | 547 | No hit | No description |
CDD | cd12203 | 5.03E-22 | 449 | 526 | No hit | No description |
PROSITE profile | PS50090 | 6.388 | 450 | 519 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 595 aa Download sequence Send to blast |
MFDGGVPEQI HRFITSPPPP PPLPPHQPAA ERSLPFPVSY TSFNTNHHML NLDSRKIIHH 60 HHFHHHHDIK DGGATSEWLV HTDHRDGDNH HHPWCSDEVL ALLGFRSTVE NWFPEFTWEH 120 TSRKLAEVGF KRSPQECKEK FEEEERRYFN SNNNTNDLSN YNNKGNYRIL SEVEEFYHHG 180 HADDEHVSSE VGENQNKRNN ALEAKETIEE TGQDVLEENK RDQDQDQGQV EEAPMMENKI 240 KSVDNVIKVG NVEDDARSSS SSSLMMIMRD KKKKKRKKEK ERFGVLKGFC EGLVRNMIAQ 300 QEEMHKKLLE DMAKKEEEKM AREEAWKKQE MERLNKEIEI RAHEQAIASD RDTSIIKFIS 360 KFTDHGDDDD GNKVQISNAS QGSSLALSQT QESRKIQTSP LSKTLIPHTP LTSLEINEKS 420 LEPISTQTLK PKTRIPRLPK SDEKNDLGKR WPRDEVLALI NIRCSISSMN DDDHKEGMIS 480 SPSSSSKSIP LWERISKKML EIGYKRSAKR CKEKWENINK YFRKTKDVNK KRPLDSRTCP 540 YFHQLTALYS QPSTGATTRP EEDRVGSGDP AAMHVDADDV GEKTNVEYSG FDLEF |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 271 | 276 | KKKKRK |
2 | 271 | 277 | KKKKRKK |
3 | 273 | 277 | KKRKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00011 | PBM | Transfer from AT5G28300 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KFK26563.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013643859.1 | 0.0 | trihelix transcription factor GTL2 | ||||
Swissprot | Q8H181 | 0.0 | GTL2_ARATH; Trihelix transcription factor GTL2 | ||||
TrEMBL | A0A087G9L1 | 0.0 | A0A087G9L1_ARAAL; Uncharacterized protein | ||||
STRING | A0A087G9L1 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8268 | 28 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28300.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|