PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26458.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GeBP
Protein Properties Length: 433aa    MW: 47649.2 Da    PI: 4.6829
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26458.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573118.53.6e-37124222298
      DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                 lfqrlw++eDei lL+G++d+  +++g+s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq +f++s+kiW++
  KFK26458.1 124 LFQRLWTDEDEIELLRGFLDYmSSHRGSSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQATFDISRKIWNQ 222
                 79*******************778999999989****************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.3E-34125221IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MTSDERDAVE SPDLEEDGGV GGGGETDSDE DLPETEDLVI PETNDADEDD PEYEDLNSPS  60
MVSAVAPLVS CTTKSSSSTG TVTVALPAGS AVPVAAIPVD SEPKWHRMTE IVHHRPPIDD  120
SRRLFQRLWT DEDEIELLRG FLDYMSSHRG SSSHPPDTAP FYEQIKSKLQ LDFNKNQLVE  180
KLRRLKKKYR NVMSKISSGK EVFFKSPHDQ ATFDISRKIW NQTGKIIGFE DNNVMDFDET  240
NNHNVTNANF PIANLNVDID SENGFEKKVT FTGSRKRSRS RSRVGKIDED KPIAQLDVPV  300
PNAATNVNLN DNVAASGDFI DGRHLGGLIE ETVRNCVSPL IKEMMNGTTG MMMAALGGFP  360
GGGAHSLGAL SPMLMPSMNL GFGVGGGGKA VGEERWRRQR ILELEVYSRR LELVQEQIRA  420
TVNELKTMPS IGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274282RKRSRSRSR
2275280KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26458.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001318667.10.0DNA-binding storekeeper protein-related transcriptional regulator
RefseqNP_198156.10.0DNA-binding storekeeper protein-related transcriptional regulator
SwissprotF4K5T40.0STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLA0A087G9A60.0A0A087G9A6_ARAAL; Uncharacterized protein
STRINGA0A087G9A60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.10.0DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]