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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK26432.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 222aa MW: 25596.7 Da PI: 9.4711 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.2 | 3.3e-16 | 10 | 46 | 2 | 38 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 +ie++s r+ tf kR+ gilKKAeEL +LCd+ +++ KFK26432.1 10 FIESESARKSTFKKRKRGILKKAEELAILCDVPICMR 46 8*********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.367 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.8E-20 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.71E-20 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 2.62E-21 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.3E-15 | 10 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MTRQKLKLAF IESESARKST FKKRKRGILK KAEELAILCD VPICMRIDSP YDPNPEVWPS 60 EEKMSKIVSD WKMLSVMDKT KKMVNLETFL QQRITKEIES WRKLRKENRE REMKEVMFDC 120 IKGKTSVSQI AKTDLPDLAC VIDQCLKDLN HRIEVLNKNG ESSSSSAFVA STAATTPSNA 180 MSMVEMRSSS VEFYNKIREQ IEKSLNMETS IKDLDLNQKQ MG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK26432.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010421522.1 | 7e-95 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A087G980 | 1e-161 | A0A087G980_ARAAL; Uncharacterized protein | ||||
STRING | A0A087G980 | 1e-161 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26630.1 | 2e-78 | M-type_MADS family protein |