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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK26110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | G2-like | ||||||||
Protein Properties | Length: 264aa MW: 29851.4 Da PI: 9.5531 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.2 | 5.2e-30 | 80 | 133 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rl+Wtp+LH+rFv+av++L G+++A+Pkti+++m v+gLt+e+v+SHLQkYRl KFK26110.1 80 RQRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQFMRVEGLTRENVASHLQKYRL 133 58*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.82E-20 | 77 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.113 | 77 | 136 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-30 | 79 | 138 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-24 | 81 | 133 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.8E-8 | 83 | 132 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MREEESSNWF TNLEQQLPSQ EELIPLSQSL ITPNLAIAFD LQTTNTNSGQ QQQQQQQQTN 60 STAAAESSGG GEEQARTVKR QRLVWTPQLH KRFVDAVAHL GIKNAVPKTI MQFMRVEGLT 120 RENVASHLQK YRLYLKRMQS GAGNVAGGVG DSDHLFANSH VPPQFLLPIS RQNSDQFMPS 180 FVPISSLQQH QHHQQHQSQF LHRGISAVNF TSPVNNGKVM DQSLFLARQN QQQQVFRPQV 240 ANYTEDLVES RTKPVLTLFP TRTD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 1e-31 | 80 | 136 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00056 | PBM | Transfer from AT5G05090 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK26110.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006398968.1 | 1e-106 | transcription factor MYBC1 | ||||
Swissprot | O22210 | 8e-49 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A087G8A8 | 0.0 | A0A087G8A8_ARAAL; Uncharacterized protein | ||||
STRING | A0A087G8A8 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1549 | 27 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05090.1 | 1e-73 | G2-like family protein |
Publications ? help Back to Top | |||
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