PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26093.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 458aa    MW: 48606.1 Da    PI: 8.3626
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26093.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.24.8e-124974227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                +++ C +++rtG C yG+rC+F+H++
  KFK26093.1 49 DESDCIYYLRTGVCGYGSRCRFNHPR 74
                6789********************96 PP
2zf-CCCH375.7e-1295120227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 +++ C++f+rtGtCk+G++Ck++H++
  KFK26093.1  95 GQPVCQHFLRTGTCKFGASCKYHHPR 120
                 5789********************96 PP
3zf-CCCH39.97.3e-13145169226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C++++rtG+Ck+G++C+F+H+
  KFK26093.1 145 GEKECSYYMRTGQCKFGSTCRFHHP 169
                 7899********************9 PP
4zf-CCCH34.92.5e-11298323126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +++++C++f rtG Ck+G++C+++H+
  KFK26093.1 298 PGQPECQYFIRTGDCKFGSSCRYHHP 323
                 5789*********************9 PP
5zf-CCCH28.52.7e-09346369427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 + C +fa+ G+Ck+G+ Ck+ H++
  KFK26093.1 346 AQCTHFAQHGICKFGPACKYDHSM 369
                 67********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.3574775IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014974IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-94974IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-65076IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-55374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.40893121IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-693120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-694120IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-995120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-598120IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6143170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356143171IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10145169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6146170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4149168IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5297324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.873297325IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-8299323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-6301325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4303323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272342370IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4342369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5346370IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-7346368IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MERYGEGSRS DPSLEWTAPG TQTGIEASMW RLGLRGGGGG TESYPERPDE SDCIYYLRTG  60
VCGYGSRCRF NHPRNRAPVL GSLRAEPREY PERMGQPVCQ HFLRTGTCKF GASCKYHHPR  120
QGGGVGGDSV TPISLNYMGF PLRPGEKECS YYMRTGQCKF GSTCRFHHPV PPGVQAPSQQ  180
QQQLSAGPAI YSSLQSQSVP SSQQYGVVIA RPQLLPGSYV QSPYGYSQMV LPPGMVPYSG  240
WNPYQASVSA IPSPGTQPSM GSSSVYGITP LSPSAPAYQS GPSSTGLSNK EQSFPQRPGQ  300
PECQYFIRTG DCKFGSSCRY HHPLEAASPK ATTLSHIGLP LRPGAAQCTH FAQHGICKFG  360
PACKYDHSMG SSSLSYSPSA SSLTDMPVAP YPLGSSSLGT LAPSSSTSSD QRTELLSSSS  420
NKPKTTTSGG SETVAAGLSS SSSSPVTTGE SLPEPAET
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK26093.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287665.10.0zinc finger CCCH domain-containing protein 58 isoform X1
RefseqXP_023636660.10.0zinc finger CCCH domain-containing protein 58 isoform X1
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A087G8910.0A0A087G891_ARAAL; Uncharacterized protein
STRINGA0A087G8910.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]