PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK26084.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

ERF

Protein Properties

Length: 295aa MW: 32993.6 Da PI: 6.8604

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK26084.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.3	4.5e-19	33	83	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr+p + r +r +lg+f t eAa a+++a+kkl+g+ KFK26084.1 33 TYRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSVEAAMAYDEAAKKLYGH 83 69**999.******8...3.35***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.03E-28	32	88	No hit	No description
PROSITE profile	PS51032	20.732	33	90	IPR001471	AP2/ERF domain
SMART	SM00380	9.6E-34	33	96	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.22E-20	33	89	IPR016177	DNA-binding domain
Pfam	PF00847	3.1E-14	33	83	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.7E-29	33	89	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.4E-10	34	45	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.4E-10	56	72	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MQEEQPPAKK RNMGRSRKGC MKGKGGPENA TCTYRGVRQR TWGKWVAEIR EPNRGTRLWL 60 GTFNTSVEAA MAYDEAAKKL YGHEAKLNLL HPPRQQQQQV NNNLSFSSHG SGSWDYKLDT 120 IRELDLGLGP SSASSKRYMS FLQEDDDHRC LSSSGSNLCW LLPKQSDSED QESVNAPSGS 180 TLTFSTKSKP KNLMMNQNYG LSNNGAWSRF LVGQEKKTAH DVSSSCGSSD NKETISLVPS 240 GGGEGRHRPE VEEGTTGYLE MDDLLEIDDL GLLIGKNGDF KNWCCDEFQH PWNWF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-15	34	89	3	59	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269\|PubMed:11798174}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00519	DAP	Transfer from AT5G18450	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK26084.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC051626	1e-123	AC051626.5 Genomic Sequence For Arabidopsis thaliana Clone F20L16 From Chromosome V, complete sequence.
GenBank	AY560853	1e-123	AY560853.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g18450) mRNA, complete cds.
GenBank	BT026074	1e-123	BT026074.1 Arabidopsis thaliana At5g18450 mRNA, complete cds.
GenBank	CP002688	1e-123	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010420608.1	1e-169	PREDICTED: dehydration-responsive element-binding protein 2G-like
Swissprot	P61827	1e-168	DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBL	A0A087G882	0.0	A0A087G882_ARAAL; Uncharacterized protein
STRING	A0A087G882	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9978	20	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18450.1	1e-145	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]