PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25966.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GRAS
Protein Properties Length: 505aa    MW: 56016.4 Da    PI: 4.9944
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25966.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.84.7e-1281424991374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAeav++++l+la+al++r+  la+++  +m ++a++f+eALa+r+++  ++ ++a+        + s e   +  f++ +P+lkf+h+taN
  KFK25966.1 142 LVQALVACAEAVQTENLSLAEALVKRVGSLAASQVGAMGKVATFFAEALARRIYKIHPSSVAAI--------DPSFEEILQMHFYDSTPYLKFAHFTAN 232
                 689****************************************************444433333........33333344457**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIleav +++ vH+iD++i+qG+QWpaL+qaLa R +gpps+R+Tgvg+     +e ++++g++La++A+++gv+fef++l+++rl+dle+e+++++p
  KFK25966.1 233 QAILEAVTTARVVHVIDLGINQGMQWPALMQALALRHGGPPSFRLTGVGH-----SEGIQQLGWKLAQLAQAIGVEFEFKALTVERLTDLEPEMFETRP 326
                 **************************************************.....89****************************************** PP

        GRAS 199 .gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                   E+++Vn+v++ h++l++++s+e+    +  +vk ++P +++vveqea+hn+  Flerf e+l+yys+lfdsle ++   s++r++ E+  +gr+i n
  KFK25966.1 327 eSETVVVNSVFEFHTVLSQPGSIEK----LFATVKAVKPVIITVVEQEANHNGVVFLERFNESLHYYSSLFDSLEDGVLLPSQDRVMSEAY-IGRQILN 420
                 9************************....**********************************************9998888887766665.******* PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 vva+eg +r+erhetl +Wr+r++ aGF pv+l+++a kqa+lll+ ++ +dgyrvee++gsl+l W+ rp++++SaW+
  KFK25966.1 421 VVATEGVDRTERHETLVQWRKRFGLAGFVPVNLGSDAFKQASLLLEIFGgGDGYRVEENDGSLMLAWQMRPIIATSAWK 499
                 ******************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120413.4E-263497IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011299.3E-2834105No hitNo description
PROSITE profilePS5098562.264116478IPR005202Transcription factor GRAS
PfamPF035141.6E-125142499IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MKRSHQETSS VQEAPSISTN KKIKLKEEDD NMDDELLAAL GYNVRSSDMA DVAHKLEQLE  60
MVLSNDDNAF NYNNTVHYNP SDLSVWAHTM LYPDLDPTRT TPSDECTTSN KRIRLGDSAY  120
TESTTTRPVV LFYDSQETGV RLVQALVACA EAVQTENLSL AEALVKRVGS LAASQVGAMG  180
KVATFFAEAL ARRIYKIHPS SVAAIDPSFE EILQMHFYDS TPYLKFAHFT ANQAILEAVT  240
TARVVHVIDL GINQGMQWPA LMQALALRHG GPPSFRLTGV GHSEGIQQLG WKLAQLAQAI  300
GVEFEFKALT VERLTDLEPE MFETRPESET VVVNSVFEFH TVLSQPGSIE KLFATVKAVK  360
PVIITVVEQE ANHNGVVFLE RFNESLHYYS SLFDSLEDGV LLPSQDRVMS EAYIGRQILN  420
VVATEGVDRT ERHETLVQWR KRFGLAGFVP VNLGSDAFKQ ASLLLEIFGG GDGYRVEEND  480
GSLMLAWQMR PIIATSAWKL RGGRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-6113750114381Protein SCARECROW
5b3h_A6e-6113750113380Protein SCARECROW
5b3h_D6e-6113750113380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Its activity may be regulated by phytohormones such as auxin and ethylene (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25966.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197251.10.0RGA-like protein 3
SwissprotQ9LF530.0RGL3_ARATH; DELLA protein RGL3
TrEMBLA0A087G7W40.0A0A087G7W4_ARAAL; Uncharacterized protein
STRINGA0A087G7W40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.10.0RGA-like protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wild M,Achard P
    The DELLA protein RGL3 positively contributes to jasmonate/ethylene defense responses.
    Plant Signal Behav, 2013. 8(4): p. e23891
    [PMID:23425858]
  3. Shi H,Wei Y,Wang Q,Reiter RJ,He C
    Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis.
    J. Pineal Res., 2016. 60(3): p. 373-9
    [PMID:26887824]
  4. Shi H,Liu W,Wei Y,Ye T
    Integration of auxin/indole-3-acetic acid 17 and RGA-LIKE3 confers salt stress resistance through stabilization by nitric oxide in Arabidopsis.
    J. Exp. Bot., 2017. 68(5): p. 1239-1249
    [PMID:28158805]
  5. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]