PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK25540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | HSF | ||||||||
Protein Properties | Length: 157aa MW: 17873.3 Da PI: 9.8897 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 67 | 4.2e-21 | 22 | 109 | 4 | 100 |
HHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXX CS HSF_DNA-bind 4 kklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrk 100 +klye+++d+++++++ ws+ngnsf+v+++ ef +++Lp+ + + ++ F+R L ++gF+kv +ee e+++++F +g+ el+ +i+++ KFK25540.1 22 TKLYEMVNDPSTDSIVLWSQNGNSFIVWNQYEFCNDILPSLSQSRVLSIFTRRLGTFGFRKVMSEE---------YEYANDNFVRGRPELVPEIQKR 109 79**************************************************************99.........78******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.9E-25 | 16 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.23E-21 | 19 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.2E-8 | 20 | 43 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 9.6E-24 | 21 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.1E-20 | 22 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-8 | 71 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MVRDNHGGGS SRSSKPYRSL WTKLYEMVND PSTDSIVLWS QNGNSFIVWN QYEFCNDILP 60 SLSQSRVLSI FTRRLGTFGF RKVMSEEYEY ANDNFVRGRP ELVPEIQKRY IASLPPDAFV 120 FKRAAEASRG IGRIRALKLA IDESAVTKNL SNLTLSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-16 | 8 | 109 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-16 | 8 | 109 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-16 | 8 | 109 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK25540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002873596.2 | 6e-54 | heat stress transcription factor A-4a | ||||
TrEMBL | A0A087G6N8 | 1e-112 | A0A087G6N8_ARAAL; Uncharacterized protein | ||||
STRING | A0A087G6N8 | 1e-113 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM965 | 28 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18870.1 | 1e-26 | HSF family protein |