PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25397.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HB-other
Protein Properties Length: 362aa    MW: 40127.1 Da    PI: 4.2564
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25397.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.1e-09299347553
                 SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
    Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                  + +k  +e+Le+++++++ p+ +    + + ++L+ ++V  WF  rRa
  KFK25397.1 299 KRVKKAHIETLEKVYRRSKRPTNAVVSSIVQVTNLPRKRVLKWFEDRRA 347
                 5678999*****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS008240140148IPR001326Translation elongation factor EF1B, beta/delta chains, conserved site
PROSITE profilePS5007110.122292352IPR001356Homeobox domain
SMARTSM003892.1E-4296356IPR001356Homeobox domain
SuperFamilySSF466899.84E-9296357IPR009057Homeodomain-like
CDDcd000861.05E-6298347No hitNo description
PfamPF000461.0E-6299348IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-8300359IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0006414Biological Processtranslational elongation
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0005853Cellular Componenteukaryotic translation elongation factor 1 complex
GO:0003677Molecular FunctionDNA binding
GO:0003746Molecular Functiontranslation elongation factor activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAVALSSSSV AAFHLYSPSS SSGFFGNSVL FRNRNTSPCV LSLPIHHPSR SVLVFARGKN  60
RKGFGTSSSS SPSPNKNNKK RFERDDNGGG EEEDDPFEAL FNMLEEDLKD DSVDDKELTE  120
EELDALAAEL AEALGVGGDD EDDIDLFGSD VVDVVDDDDD EDEGDDDVVD EDEVGDDDDD  180
DDDDEDERPS KLKNWQLRRL AYALKAGKRK TSIKTLAAEL CLDRAYVLEL LRDPPPKLLM  240
LSATLPDEKP PVPAPENSSP DPIPEESSSS GEDVVAVEPE EKVKDEAVHV MQQTWSSKKR  300
VKKAHIETLE KVYRRSKRPT NAVVSSIVQV TNLPRKRVLK WFEDRRAEDG VPEKRAPYQA  360
PV
Functional Description ? help Back to Top
Source Description
UniProtMay modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25397.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023636034.11e-154protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
SwissprotQ8H0V51e-143OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A087G6950.0A0A087G695_ARAAL; Uncharacterized protein
STRINGA0A087G6950.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.18e-93overexpressor of cationic peroxidase 3
Publications ? help Back to Top
  1. García-Andrade J,Ramírez V,López A,Vera P
    Mediated plastid RNA editing in plant immunity.
    PLoS Pathog., 2013. 9(10): p. e1003713
    [PMID:24204264]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
    Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina.
    Plant J., 2014. 78(2): p. 227-40
    [PMID:24506441]