PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

MYB

Protein Properties

Length: 300aa MW: 31950.3 Da PI: 7.0253

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK25219.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.7	1.5e-09	11	55	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +W+ e+d + +a + + + +W++Ia+ ++ g++ +q+k+++ KFK25219.1 11 AWSREDDIAFERALANYTDEseeRWEKIAADVP-GKSVEQIKEHYE 55 7***************99*********.********95 PP
2	Myb_DNA-binding	42	2.2e-13	119	163	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky KFK25219.1 119 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 163 6*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	7.024	7	62	IPR017884	SANT domain
SMART	SM00717	3.0E-9	8	60	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-8	11	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-5	11	56	IPR009057	Homeodomain-like
CDD	cd00167	6.48E-9	11	58	No hit	No description
SuperFamily	SSF46689	2.51E-10	12	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.999	111	168	IPR017930	Myb domain
SuperFamily	SSF46689	1.27E-16	114	169	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-10	116	166	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.5E-17	116	167	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-11	119	163	IPR001005	SANT/Myb domain
CDD	cd00167	8.79E-10	119	164	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-10	119	162	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MTVEEVSNGC AWSREDDIAF ERALANYTDE SEERWEKIAA DVPGKSVEQI KEHYELLVED 60 VSRIESGCVP LPAYGSPDGS NGHAGDEGGT SKKGGNSHAG ESNQGGKSKS DQERRKGIAW 120 TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRQNSM NKDRRRSSIH 180 DITSVGNADA STPQGPITGQ NNNNNNNTSP TAVAGGGNKS AKQAASQPLP GPPMYGTPTM 240 GQPVGGPLVS AVGTPVNLPA PPHMAYGVHA APVPGSVVPG APINMGQMPY TMPRTPTAHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	6e-16	8	80	7	79	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00500	DAP	Transfer from AT5G08520	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK25219.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352981	0.0	AK352981.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-N01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006399351.1	0.0	transcription factor SRM1
Swissprot	Q9FNN6	0.0	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A087G5R7	0.0	A0A087G5R7_ARAAL; Uncharacterized protein
STRING	A0A087G5R7	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3556	28	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-167	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]