PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK25187.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

NAC

Protein Properties

Length: 287aa MW: 32551.2 Da PI: 5.0392

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK25187.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.2	2.9e-48	14	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 l pGfrF+Ptd el+++yL++k++g++ ++ vi+ev+iyk+ePwdLp ++ ++e+ew++F+ r +ky++g++++rat gyWkatgk+++v+s +++ KFK25187.1 14 LFPGFRFSPTDVELISYYLRRKIDGDEDSV-AVIAEVEIYKFEPWDLPgESKLKSENEWFYFCARGRKYPHGSQSRRATLLGYWKATGKERSVKS-GNQ 110 579**********************999.89***********543334678**********************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+k+tLvf+ grap+ge+t+W+mhey + KFK25187.1 111 IVGTKRTLVFHMGRAPRGERTEWIMHEYCI 140 **************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-53	7	155	IPR003441	NAC domain
PROSITE profile	PS51005	52.311	14	156	IPR003441	NAC domain
Pfam	PF02365	5.5E-24	16	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009845	Biological Process	seed germination
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0033619	Biological Process	membrane protein proteolysis
GO:0048573	Biological Process	photoperiodism, flowering
GO:0071472	Biological Process	cellular response to salt stress
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MSKEAELSIA VSALFPGFRF SPTDVELISY YLRRKIDGDE DSVAVIAEVE IYKFEPWDLP 60 GESKLKSENE WFYFCARGRK YPHGSQSRRA TLLGYWKATG KERSVKSGNQ IVGTKRTLVF 120 HMGRAPRGER TEWIMHEYCI NGAPQDALVV CRLRKNADFR ASSSQRQMED GLVQDDDYVS 180 TSERDKKSYS VYEPELQISN GDITESSNVV EDQAETDDDC YAEILNDDII NLDGEALKAS 240 QTFRQNDPTQ QKTIVSEASS RSRTLQTLPR TGESPIRSAS KKMIARD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-43	13	166	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-43	13	166	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-43	13	166	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-43	13	166	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-43	13	166	19	174	NAC domain-containing protein 19
3swm_B	6e-43	13	166	19	174	NAC domain-containing protein 19
3swm_C	6e-43	13	166	19	174	NAC domain-containing protein 19
3swm_D	6e-43	13	166	19	174	NAC domain-containing protein 19
3swp_A	6e-43	13	166	19	174	NAC domain-containing protein 19
3swp_B	6e-43	13	166	19	174	NAC domain-containing protein 19
3swp_C	6e-43	13	166	19	174	NAC domain-containing protein 19
3swp_D	6e-43	13	166	19	174	NAC domain-containing protein 19
3ulx_A	5e-43	4	138	10	138	Stress-induced transcription factor NAC1
4dul_A	5e-43	13	166	16	171	NAC domain-containing protein 19
4dul_B	5e-43	13	166	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00280	DAP	Transfer from AT2G27300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK25187.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634548.1	1e-169	PREDICTED: NAC domain-containing protein 40 isoform X1
Refseq	XP_013690731.1	1e-169	NAC domain-containing protein 40-like isoform X1
Swissprot	Q9XIN7	1e-160	NAC40_ARATH; NAC domain-containing protein 40
TrEMBL	A0A087G5N5	0.0	A0A087G5N5_ARAAL; Uncharacterized protein
STRING	A0A087G5N5	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10453	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27300.1	1e-163	NTM1-like 8

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] Tian H, et al. NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1. Plant Physiol., 2017. 174(4): p. 2363-2375 [PMID:28649093]