PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25083.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 329aa    MW: 36598 Da    PI: 8.7972
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25083.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-17177231256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++k q   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  KFK25083.1 177 RKKLRLSKGQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 231
                 6788899**********************************************98 PP
2HD-ZIP_I/II127.84.7e-41177267192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlsk q+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +lk
   KFK25083.1 177 RKKLRLSKGQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELR-ALK 267
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-17156231IPR009057Homeodomain-like
SuperFamilySSF466897.94E-18169234IPR009057Homeodomain-like
PROSITE profilePS5007116.698173233IPR001356Homeobox domain
SMARTSM003891.0E-15175237IPR001356Homeobox domain
CDDcd000869.05E-15177234No hitNo description
PfamPF000465.2E-15177231IPR001356Homeobox domain
PROSITE patternPS000270208231IPR017970Homeobox, conserved site
PfamPF021832.7E-11233267IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.5E-25233276IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MELALSLGDN TNKQFSFLEN PSKMINPSAS STSTSDKDLR FCIGFGGHRS LSSSSSPSVE  60
EEKKKATEPN NRFRVSSSSV DPPLQLQLHF PNWLPENSQQ GGRMLLGATT VAEEEEAVPS  120
MSVSPPDSVT SSFQLDFGIK SYGYERSSNK RDLDDEVDRS ASRASNEDND DENGSTRKKL  180
RLSKGQSAFL EDSFKEHSTL NPKQKIALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE  240
YLKRCCESLT EENRRLQKEV KELRALKTSS SPFYMQLPAT TLTMCPSCER VATSTALPST  300
SAVHNLGLST SSLRGPLIPV KPRPAKQVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175181TRKKLRL
2225233RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25083.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4311820.0AJ431182.2 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT14 (hat14 gene).
GenBankAK2274230.0AK227423.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL14-07-H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196289.20.0homeobox leucine zipper protein
SwissprotP466650.0HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A087G5D10.0A0A087G5D1_ARAAL; Uncharacterized protein
STRINGA0A087G5D10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-168homeobox from Arabidopsis thaliana