PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK25025.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 289aa    MW: 32626.9 Da    PI: 7.1155
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK25025.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.61.2e-3344159199
                 EEEE-..-HHHHTT-EE--HHH.HTT.................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                 f+k ltpsdv+k++rlv+pk++ae++                 ++++e+++ l++edesg+ W+++++y+++s++yvltkGW++Fvk+++L+ gD+v F
  KFK25025.1  44 FEKSLTPSDVGKLNRLVIPKQHAEKYfplntmiitsnaadtssSSSSEKGMLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFF 142
                 99***********************************999999777789************************************************** PP

                 EE-SSSEE..EEEEE-S CS
          B3  83 kldgrsefelvvkvfrk 99 
                 +++++++++l+++++r+
  KFK25025.1 143 QRHRSDSRRLFIGWRRR 159
                 *98889999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-4140167IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-3042160IPR015300DNA-binding pseudobarrel domain
CDDcd100177.29E-2843150No hitNo description
PROSITE profilePS5086313.9344160IPR003340B3 DNA binding domain
PfamPF023623.9E-3144159IPR003340B3 DNA binding domain
SMARTSM010193.0E-2644160IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSVNHYSTDH HHNTLLWQQH RHTTDTSEPT TTTWLNEDLK ESLFEKSLTP SDVGKLNRLV  60
IPKQHAEKYF PLNTMIITSN AADTSSSSSS EKGMLLSFED ESGKCWRFRY SYWNSSQSYV  120
LTKGWSRFVK DKQLDPGDVV FFQRHRSDSR RLFIGWRRRG QSSSSSVAAV NTSSYSTSMA  180
PPPPPYRNNY SHSEYSHYGA AVATAAETHS IPSPSTVVGS SRTVRLFGVN LECQMDENDG  240
DVAAATAIES PCTDGYYGQN MYYYYSPDPQ NMNIAFTGDT MKQLGERRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-50401594113B3 domain-containing transcription factor NGA1
5os9_B4e-50401594113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK25025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012344.11e-152B3 domain-containing protein At5g06250 isoform X1
SwissprotQ9FNI31e-130Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A087G5730.0A0A087G573_ARAAL; Uncharacterized protein
STRINGA0A087G5730.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-123B3 family protein