PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK24683.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | B3 | ||||||||
Protein Properties | Length: 778aa MW: 85973.6 Da PI: 7.9422 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.8 | 2.1e-18 | 286 | 385 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++lv++ KFK24683.1 286 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDIKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRTE-PEGKLVMG 382 99**************************555566778***************9989999999***9.********************654.77777777 PP EE- CS B3 96 vfr 98 ++ KFK24683.1 383 YRK 385 665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.8E-30 | 278 | 389 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.93E-20 | 283 | 385 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.65E-22 | 284 | 385 | No hit | No description |
PROSITE profile | PS50863 | 11.053 | 286 | 387 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-15 | 286 | 385 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-20 | 286 | 386 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.758 | 515 | 565 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 3.8E-13 | 520 | 562 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 778 aa Download sequence Send to blast |
MMESTTKVCM NAQCGAPSTS GDWKRGWPMR SGQFAPLCVK CGSAYEQSIF CQLFHAEEPG 60 WRQCHSCDKR LHCGCIASRF MMELLDNGGV TCITCAKKSG FFSINETNGK LENGARELPS 120 FASPEHLGHV LDRTSLKHLL HFQRISPTQS FLHLKQEDNP LLPARLDALR HKTENHEFHP 180 NLSISLGPTL MTSPFHDASV DDTSRNIPIF QLAPRSRQLL PKPANSAPTA PGMDPNGSLV 240 SQIHVARPPP EGRGKTQLLP RYWPRITDQE LQQLSGHSNS KIVPLFEKVL SASDAGRIGR 300 LVLPKACAEA YFPPISQPEG LPLKIQDIKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM 360 QLQAGDTVTF SRTEPEGKLV MGYRKATNTT AAQMFKGSSE PNLNMFSNNL NPGCGDINWS 420 KLEKSEDMAK DHLLLQSSQI PARKRARNIG SKSKRLLIDS VDVLELRLTW EEAQELLRPP 480 PSAKPSIFTV EDHDFEEYDE PPVFGKRTVF VSRQAGEQEQ WVQCDACGKW RRLPVDTLLP 540 PKWLCSDNLL DPARSSCSAP DELSPREQDA LVRLNKEFKR RRLASSNQEA SALNTLANAA 600 ITTTGEQGDI VVAATTKHPR HRAGCSCIVC SQPPSGKGKH KPSCTCTVCE AVKRRFKTLM 660 MRKRNRGEAG QASQQTQSEC RDETEVESIP LVEPAAGGNI DLNSDPGASR VSMMSLLQAA 720 TFPLEAYLKQ KAMSNTTTPP PTAAVEQQSS DMVSTEHGSS SAAQEPERDT SGAPEPLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 1e-68 | 264 | 393 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 578 | 582 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK24683.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228013 | 0.0 | AK228013.1 Arabidopsis thaliana mRNA for predicted protein, complete cds, clone: RAFL14-53-K16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010447454.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X3 | ||||
Swissprot | Q5CCK4 | 0.0 | VAL2_ARATH; B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | A0A087G481 | 0.0 | A0A087G481_ARAAL; Uncharacterized protein | ||||
STRING | A0A087G480 | 0.0 | (Arabis alpina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Publications ? help Back to Top | |||
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