PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK23375.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 680aa    MW: 76258.1 Da    PI: 6.4112
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK23375.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.3e-1860115156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++e+e++F++n++p+ ++r+ L++klgL+  ++k+WFqN+R+k k
  KFK23375.1  60 KKRYQRHTSSQIQEMEAFFKENPHPDDKQRTMLSEKLGLKPLKIKFWFQNKRTKIK 115
                 688999************************************************87 PP
2START140.81.4e-442174403206
                 HHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT... CS
       START   3 aeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg... 88 
                 a ++ qel+k+ + +ep+W k        ++e+++  +  + e++ ++ ea+ra gvv+m++ +lv+++ld   +W+e +     +a++++ issg   
  KFK23375.1 217 AVSCVQELIKMCETNEPLWNKKEsllclnDEEYNKMFMCPLMEKDQFRREASRANGVVFMNSSTLVNSFLDAD-KWSELFCsivsRAKMVQIISSGvsg 314
                 67899**************9998899998555554444444444445**************************.****9999999************** PP

                 ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE......-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
       START  89 ..galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvd......seqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                   g l lm+aelq+ +plv+ R+ +f+Ry +q +++g+w+ivd  vd       +++ +++ ++    + pSg++i+++++g+s vtwvehv+++++++
  KFK23375.1 315 asGSLILMYAELQVQTPLVSpREGYFLRYVEQnKEQGTWMIVDFPVDrfhgliKPASSTTTEQYR---RKPSGCIIQDMPDGYSHVTWVEHVEVEEKHV 410
                 *****************9999**********************8887332111344444345555...5****************************** PP

                 .HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 .hwllrslvksglaegaktwvatlqrqcek 206
                  h+++r  +++g+a+ga +w+a lqrqce+
  KFK23375.1 411 hHEMVREYIQTGAAFGADRWLAVLQRQCER 440
                 9***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1850118IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-1956123IPR009057Homeodomain-like
PROSITE profilePS5007116.3957117IPR001356Homeobox domain
SMARTSM003899.2E-1859121IPR001356Homeobox domain
PfamPF000463.5E-1660115IPR001356Homeobox domain
CDDcd000861.38E-1660118No hitNo description
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PROSITE profilePS5084842.466206443IPR002913START domain
SuperFamilySSF559611.22E-27207440No hitNo description
CDDcd088751.34E-90210439No hitNo description
SMARTSM002348.7E-26215440IPR002913START domain
PfamPF018522.6E-37217440IPR002913START domain
Gene3DG3DSA:3.30.530.207.8E-4269406IPR023393START-like domain
SuperFamilySSF559613.02E-8460640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MYEEEEEDVV IYNSDNNILG SVSSSPTRTT TLNPNVSFVT MKEEYGLIAT GSDTLPPAKK  60
KRYQRHTSSQ IQEMEAFFKE NPHPDDKQRT MLSEKLGLKP LKIKFWFQNK RTKIKLQQDK  120
QENVMLREEN KALKIENQNL MSDLSHLSCS SCGSSGDKLR LENYNLRLQL NMLESIASFM  180
NPPLSLSQNT ICFFPEANNN NDISIAEEDK ASVMVLAVSC VQELIKMCET NEPLWNKKES  240
LLCLNDEEYN KMFMCPLMEK DQFRREASRA NGVVFMNSST LVNSFLDADK WSELFCSIVS  300
RAKMVQIISS GVSGASGSLI LMYAELQVQT PLVSPREGYF LRYVEQNKEQ GTWMIVDFPV  360
DRFHGLIKPA SSTTTEQYRR KPSGCIIQDM PDGYSHVTWV EHVEVEEKHV HHEMVREYIQ  420
TGAAFGADRW LAVLQRQCER MVSLMATNVT DLGVIPSLEA RKNLMRLSQR MVRLFCRNIS  480
DSYRESLSRS TKDTVIVMSK KVRDGIVLCA VTTTLLPCSH LQVFDLLRDN HHHHSQQEIL  540
FNGNSIQELA HIANGSHLGN CISLLRNNLE LILQETCTDN SGSLVVYSTV NPNAVQLAMN  600
GEDLSKIPLL PLGVSIVPVN PSEGIFANSP SCLLTVGIQV LTSKASAAKL DMSTVTAISN  660
RLSSTVNQIT AALGSSGLGN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK23375.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004764.10.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein HDG4
SwissprotQ8L7H40.0HDG4_ARATH; Homeobox-leucine zipper protein HDG4
TrEMBLA0A087G0H30.0A0A087G0H3_ARAAL; Uncharacterized protein
STRINGA0A087G0H30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17710.10.0homeodomain GLABROUS 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]