PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK23321.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 351aa    MW: 39837.1 Da    PI: 10.3492
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK23321.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.2e-31285343360
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                 D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe eHnh+k
  KFK23321.1 285 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCLEDPAMLIVTYEAEHNHPK 343
                 99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.3E-17235281IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.3E-33271343IPR003657WRKY domain
PROSITE profilePS5081130.481278344IPR003657WRKY domain
SuperFamilySSF1182901.24E-26281343IPR003657WRKY domain
SMARTSM007742.0E-37283343IPR003657WRKY domain
PfamPF031061.8E-26285342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEEIEGSNRA AVESCHRVLN LLSRPQQQDH VYDRNLVSET REAVCRFKRV SNLLSSSVGH  60
ARFRRAKKPQ THLSQPIFLD PCHQRTERPS SQQTPVLRSG FHELSLRPTD SLTLGTRSFS  120
AKAPLLQLNQ QAMPTSTFPN LFHEQQQQLH ERLQAHHLHQ QQQQQKHQAE IMLRKCNGGI  180
SLSFDNSSCT PTMSSTRSFV SSLSIDGSVA NIEGKNSFHF VRAPNSMDQS SQHSKRKCPM  240
KGDEHGSVKC GSSSRCHCSK KRKHRVRRSI RVPAISNKVA DIPPDDYSWR KYGQKPIKGS  300
PYPRGYYKCS SMRGCPARKH VERCLEDPAM LIVTYEAEHN HPKIPAQTVT T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20271346276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK23321.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530390.0AK353039.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-E12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410164.10.0probable WRKY transcription factor 21
SwissprotO043360.0WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A087G0B90.0A0A087G0B9_ARAAL; Uncharacterized protein
STRINGA0A087G0B90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-178WRKY DNA-binding protein 21